JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ILKAP_chr2_238165402_238208695	0/0	c0004	1179	3	2	1	0	0	0	copy fasta	ILKAP	chr2	238165402	238208695
ILKAP_chr2_238165402_238208695	0/0	c0005	1179	1	0	0	1	0	0	copy fasta	ILKAP	chr2	238165402	238208695
ILKAP_chr2_238165402_238208695	0/0	c0006	1179	1	0	0	1	0	0	copy fasta	ILKAP	chr2	238165402	238208695
ILKAP_chr2_238165402_238208695	0/0	c0007	1179	1	0	0	1	0	0	copy fasta	ILKAP	chr2	238165402	238208695
ILK_chr11_6598774_6615870	1/1	c0001	1359	221	30	49	106	8	26	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	c0002	1359	152	42	22	70	4	14	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	c0003	1359	53	9	14	21	3	6	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	c0004	1359	7	6	0	0	1	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	c0005	1359	7	7	0	0	0	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	c0006	1359	3	0	0	3	0	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	c0007	1359	2	0	0	2	0	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	c0008	1359	2	1	0	1	0	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	c0009	1359	2	0	0	2	0	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	c0010	1359	1	1	0	0	0	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	c0011	1359	1	0	0	1	0	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	c0012	1359	1	0	1	0	0	0	copy fasta	ILK	chr11	6598774	6615870
ILRUN_chr6_34582288_34701767	1/1	c0001	897	312	76	52	138	10	34	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	c0002	897	4	4	0	0	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILVBL_chr19_15109987_15130786	0/0	c0001	1899	87	2	17	50	5	13	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0002	1899	68	1	10	43	2	12	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0003	1899	56	12	12	24	1	7	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0004	1899	39	31	4	2	1	1	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	1/0	c0005	1899	30	6	5	10	6	2	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/1	c0006	1899	30	8	14	2	1	4	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0007	1899	30	6	2	21	0	1	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0008	1899	29	0	10	13	2	4	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0009	1899	13	0	2	9	0	2	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0010	1899	8	8	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0011	1899	5	0	0	5	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0012	1899	4	0	1	1	0	2	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0013	1899	4	0	0	4	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0014	1899	4	3	1	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0015	1899	3	0	0	3	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0016	1899	2	2	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0017	1899	2	1	1	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0018	1899	1	0	0	1	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0019	1899	1	0	1	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0020	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0021	1899	1	0	0	1	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0022	1899	1	0	1	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0023	1899	1	0	0	0	0	1	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0024	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0025	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0026	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0027	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0028	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0029	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0030	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0031	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0032	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786