JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALG2_chr9_99211425_99226942	0/0	c0005	1251	1	0	1	0	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	c0006	1251	1	0	0	1	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	c0007	1251	1	0	1	0	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	c0008	1251	1	0	0	1	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	c0009	1251	1	0	1	0	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	c0010	1251	1	0	0	1	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	c0011	1251	1	1	0	0	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG3_chr3_184237301_184253962	1/1	c0001	1317	313	72	59	135	16	29	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	c0002	1317	20	17	3	0	0	0	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	c0003	1317	1	0	1	0	0	0	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	c0004	1317	1	1	0	0	0	0	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	c0005	1317	1	1	0	0	0	0	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	c0006	1317	1	0	0	0	0	1	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	c0007	1317	1	0	0	1	0	0	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	c0008	1317	1	1	0	0	0	0	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	c0009	1317	1	0	1	0	0	0	copy fasta	ALG3	chr3	184237301	184253962
ALG5_chr13_36944738_37004340	1/1	c0001	975	266	85	65	78	12	24	copy fasta	ALG5	chr13	36944738	37004340
ALG5_chr13_36944738_37004340	0/0	c0002	975	3	2	0	1	0	0	copy fasta	ALG5	chr13	36944738	37004340
ALG5_chr13_36944738_37004340	0/0	c0003	975	2	2	0	0	0	0	copy fasta	ALG5	chr13	36944738	37004340
ALG5_chr13_36944738_37004340	0/0	c0004	975	2	0	0	0	0	2	copy fasta	ALG5	chr13	36944738	37004340
ALG5_chr13_36944738_37004340	0/0	c0005	975	1	0	1	0	0	0	copy fasta	ALG5	chr13	36944738	37004340
ALG5_chr13_36944738_37004340	0/0	c0006	975	1	0	0	1	0	0	copy fasta	ALG5	chr13	36944738	37004340
ALG5_chr13_36944738_37004340	0/0	c0007	975	1	1	0	0	0	0	copy fasta	ALG5	chr13	36944738	37004340
ALG6_chr1_63362627_63443553	0/0	c0001	1524	291	61	43	144	7	36	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	1/1	c0002	1524	74	9	16	37	3	7	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	c0003	1524	8	7	1	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	c0004	1524	7	7	0	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	c0005	1524	4	0	4	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	c0006	1524	1	0	0	0	0	1	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	c0007	1524	1	0	0	1	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	c0008	1524	1	1	0	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	c0009	1524	1	1	0	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG8_chr11_78095946_78144626	1/0	c0001	1581	326	67	54	160	8	36	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/1	c0002	1581	53	4	16	23	4	5	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	c0003	1581	11	10	1	0	0	0	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	c0004	1581	5	5	0	0	0	0	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	c0005	1581	2	0	2	0	0	0	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	c0006	1581	1	0	1	0	0	0	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	c0007	1581	1	0	0	0	0	1	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	c0008	1581	1	0	0	1	0	0	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	c0009	1581	1	0	0	1	0	0	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	c0010	1581	1	0	0	1	0	0	copy fasta	ALG8	chr11	78095946	78144626
ALG9_chr11_111777195_111876581	1/1	c0001	1857	198	62	44	60	11	19	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	c0002	1857	97	15	16	50	1	15	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	c0003	1857	6	6	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	c0004	1857	4	0	0	4	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	c0005	1857	2	2	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	c0006	1857	2	0	0	2	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	c0007	1857	2	1	1	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	c0008	1857	1	0	1	0	0	0	copy fasta	ALG9	chr11	111777195	111876581