JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ILVBL_chr19_15109987_15130786	0/0	c0033	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0034	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0035	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0036	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0037	1899	1	0	1	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0038	1899	1	0	0	1	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0039	1899	1	0	0	1	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0040	1899	1	0	0	1	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0041	1899	1	0	0	0	0	1	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0042	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	c0043	1899	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
IMMP1L_chr11_31427401_31514622	1/1	c0001	501	296	84	48	116	8	38	copy fasta	IMMP1L	chr11	31427401	31514622
IMMP1L_chr11_31427401_31514622	0/0	c0002	501	1	1	0	0	0	0	copy fasta	IMMP1L	chr11	31427401	31514622
IMMP1L_chr11_31427401_31514622	0/0	c0003	501	1	1	0	0	0	0	copy fasta	IMMP1L	chr11	31427401	31514622
IMMP2L_chr7_110657644_111567492	0/0	c0001	528	76	46	11	6	2	11	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	c0002	528	7	6	1	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	c0003	528	1	0	0	0	0	1	copy fasta	IMMP2L	chr7	110657644	111567492
IMMT_chr2_86138936_86200462	1/0	c0001	2277	74	52	8	5	1	7	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/1	c0002	2277	74	6	20	32	6	9	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0003	2277	72	0	10	51	1	10	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0004	2277	62	16	4	40	2	0	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0005	2277	36	0	0	32	0	4	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0006	2277	33	0	18	9	1	5	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0007	2277	8	8	0	0	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0008	2277	6	2	2	0	0	2	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0009	2277	2	0	2	0	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0010	2277	2	0	0	2	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0011	2277	1	1	0	0	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0012	2277	1	0	0	1	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0013	2277	1	0	0	1	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0014	2277	1	0	0	0	1	0	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0015	2277	1	1	0	0	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0016	2277	1	0	0	1	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0017	2277	1	0	0	1	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0018	2277	1	0	0	0	0	1	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	c0019	2277	1	0	0	1	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMP3_chr15_75634093_75645224	1/1	c0001	555	206	46	38	90	9	21	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	c0002	555	187	47	33	85	3	19	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	c0003	555	3	0	0	3	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	c0004	555	1	0	0	1	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	c0005	555	1	1	0	0	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	c0006	555	1	0	1	0	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	c0007	555	1	0	0	1	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP4_chr2_130337897_130352967	1/0	c0001	876	336	53	54	182	9	37	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	c0002	876	23	22	1	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	c0003	876	16	1	6	0	5	4	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	c0004	876	10	10	0	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/1	c0005	876	7	3	3	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	c0006	876	5	3	2	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	c0007	876	1	0	0	1	0	0	copy fasta	IMP4	chr2	130337897	130352967