JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IMP4_chr2_130337897_130352967	0/0	c0008	876	1	0	0	1	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	c0009	876	1	0	0	0	0	1	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	c0010	876	1	1	0	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	c0011	876	1	1	0	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMPA1_chr8_81651914_81691325	1/1	c0001	834	375	93	74	153	12	41	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	c0002	834	2	2	0	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	c0003	834	1	0	0	1	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	c0004	834	1	0	0	0	0	1	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	c0005	834	1	1	0	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA2_chr18_11976507_12035877	1/1	c0001	867	271	75	58	92	14	30	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	c0002	867	72	19	9	41	0	3	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	c0003	867	9	0	0	9	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	c0004	867	3	3	0	0	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	c0005	867	3	0	0	3	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	c0006	867	2	0	0	2	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	c0007	867	1	0	0	1	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	c0008	867	1	0	0	0	0	1	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	c0009	867	1	0	1	0	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	c0010	867	1	1	0	0	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPACT_chr18_24421670_24458531	0/0	c0001	963	307	87	61	120	12	27	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	1/1	c0002	963	69	3	1	58	0	5	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	c0003	963	21	3	9	1	2	6	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	c0004	963	1	1	0	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	c0005	963	1	0	0	0	0	1	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	c0006	963	1	0	0	1	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	c0007	963	1	0	0	0	0	1	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	c0008	963	1	0	1	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPDH1_chr7_128387277_128414982	1/0	c0001	1800	234	63	43	96	6	25	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/1	c0002	1800	111	20	18	62	3	7	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	c0003	1800	57	6	10	26	3	12	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	c0004	1800	5	1	4	0	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	c0005	1800	1	0	0	1	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	c0006	1800	1	1	0	0	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	c0007	1800	1	0	1	0	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	c0008	1800	1	0	0	1	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	c0009	1800	1	1	0	0	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	c0010	1800	1	0	0	1	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	c0011	1800	1	0	0	1	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH2_chr3_49019325_49034398	1/1	c0001	1545	299	84	56	102	16	39	copy fasta	IMPDH2	chr3	49019325	49034398
IMPDH2_chr3_49019325_49034398	0/0	c0002	1545	1	0	0	0	0	1	copy fasta	IMPDH2	chr3	49019325	49034398
IMPDH2_chr3_49019325_49034398	0/0	c0003	1545	1	0	0	1	0	0	copy fasta	IMPDH2	chr3	49019325	49034398
IMPDH2_chr3_49019325_49034398	0/0	c0004	1545	1	0	0	0	0	1	copy fasta	IMPDH2	chr3	49019325	49034398
IMPDH2_chr3_49019325_49034398	0/0	c0005	1545	1	0	0	1	0	0	copy fasta	IMPDH2	chr3	49019325	49034398
IMPDH2_chr3_49019325_49034398	0/0	c0006	1545	1	0	0	0	0	1	copy fasta	IMPDH2	chr3	49019325	49034398
IMPG1_chr6_75916114_76077662	0/0	c0001	2394	84	26	8	45	0	5	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	1/0	c0002	2394	57	23	9	14	3	7	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0003	2394	35	5	12	14	1	3	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0004	2394	19	0	0	19	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0005	2394	14	0	3	8	1	2	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/1	c0006	2394	14	0	8	1	2	2	copy fasta	IMPG1	chr6	75916114	76077662