JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IMPG1_chr6_75916114_76077662	0/0	c0007	2394	13	6	6	0	1	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0008	2394	11	0	4	7	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0009	2394	10	3	0	7	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0010	2394	8	0	3	4	1	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0011	2394	6	0	2	0	1	3	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0012	2394	5	1	3	0	0	1	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0013	2394	4	0	0	4	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0014	2394	3	0	0	3	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0015	2394	2	2	0	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0016	2394	2	2	0	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0017	2394	2	2	0	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0018	2394	2	2	0	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0019	2394	1	0	0	0	0	1	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0020	2394	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0021	2394	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0022	2394	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0023	2394	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0024	2394	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0025	2394	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0026	2394	1	1	0	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0027	2394	1	1	0	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0028	2394	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	c0029	2394	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG2_chr3_101217546_101325575	0/0	c0001	3726	214	53	37	94	8	22	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	1/1	c0002	3726	62	14	12	20	6	8	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0003	3726	62	14	13	28	2	5	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0004	3726	4	4	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0005	3726	2	0	0	2	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0006	3726	2	0	0	2	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0007	3726	2	0	2	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0008	3710	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0009	3726	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0010	3726	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0011	3726	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0012	3726	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0013	3726	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0014	3726	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0015	3726	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0016	3726	1	0	0	0	0	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0017	3726	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0018	3726	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	c0019	3726	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
INAFM1_chr19_47269885_47280723	0/1	c0001	429	165	18	24	93	8	21	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	1/0	c0002	429	122	12	27	63	7	12	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	c0003	429	90	52	18	12	1	7	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	c0004	429	7	6	1	0	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	c0005	429	2	2	0	0	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	c0006	429	2	2	0	0	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	c0007	429	1	0	0	1	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	c0008	429	1	0	0	1	0	0	copy fasta	INAFM1	chr19	47269885	47280723