JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INAFM1_chr19_47269885_47280723	0/0	c0009	429	1	0	0	1	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	c0010	429	1	0	0	1	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	c0011	411	1	0	0	1	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	c0012	429	1	0	0	1	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM2_chr15_40318692_40331715	1/1	c0001	462	393	86	70	170	17	48	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	c0002	462	6	5	1	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	c0003	462	2	0	1	0	1	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	c0004	462	1	1	0	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAVA_chr1_200889900_200920742	0/0	c0001	1737	148	31	14	85	2	16	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/1	c0002	1737	116	11	34	51	11	8	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	1/0	c0003	1737	57	31	14	2	3	6	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0004	1737	37	12	1	17	0	7	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0005	1737	13	1	4	6	0	2	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0006	1737	12	1	1	9	0	1	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0007	1737	7	0	0	7	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0008	1737	7	0	0	6	0	1	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0009	1737	4	0	0	4	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0010	1737	3	0	0	3	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0011	1737	3	3	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0012	1737	3	0	3	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0013	1737	3	0	1	2	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0014	1737	2	2	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0015	1737	1	0	1	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0016	1737	1	0	0	1	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0017	1737	1	0	1	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0018	1737	1	1	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0019	1737	1	0	0	1	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0020	1737	1	1	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0021	1737	1	0	0	0	0	1	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0022	1737	1	0	0	1	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	c0023	1737	1	0	0	1	0	0	copy fasta	INAVA	chr1	200889900	200920742
INA_chr10_103272138_103295346	1/1	c0001	1500	391	82	61	196	14	36	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	c0002	1500	11	3	2	0	0	6	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	c0003	1500	9	4	3	0	2	0	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	c0004	1500	2	0	0	0	0	2	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	c0005	1500	1	0	0	1	0	0	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	c0006	1500	1	1	0	0	0	0	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	c0007	1500	1	0	0	1	0	0	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	c0008	1500	1	1	0	0	0	0	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	c0009	1500	1	1	0	0	0	0	copy fasta	INA	chr10	103272138	103295346
INCA1_chr17_4983130_5002522	1/0	c0001	711	355	79	71	155	12	37	copy fasta	INCA1	chr17	4983130	5002522
INCA1_chr17_4983130_5002522	0/1	c0002	711	29	4	5	14	4	1	copy fasta	INCA1	chr17	4983130	5002522
INCA1_chr17_4983130_5002522	0/0	c0003	711	11	2	0	9	0	0	copy fasta	INCA1	chr17	4983130	5002522
INCA1_chr17_4983130_5002522	0/0	c0004	711	1	0	0	1	0	0	copy fasta	INCA1	chr17	4983130	5002522
INCA1_chr17_4983130_5002522	0/0	c0005	711	1	1	0	0	0	0	copy fasta	INCA1	chr17	4983130	5002522
INCA1_chr17_4983130_5002522	0/0	c0006	711	1	0	0	1	0	0	copy fasta	INCA1	chr17	4983130	5002522
INCENP_chr11_62119011_62158169	0/0	c0001	2757	93	19	11	49	3	11	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0002	2757	74	0	3	61	3	7	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/1	c0003	2757	45	9	13	16	3	3	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0004	2757	31	6	11	6	5	3	copy fasta	INCENP	chr11	62119011	62158169