JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INCENP_chr11_62119011_62158169	0/0	c0005	2772	13	12	1	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0006	2757	10	0	10	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0007	2757	10	0	6	0	0	4	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	1/0	c0008	2757	10	4	2	3	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0009	2757	9	9	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0010	2757	6	3	3	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0011	2772	4	4	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0012	2757	4	4	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0013	2757	4	4	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0014	2757	3	3	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0015	2757	3	2	1	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0016	2757	3	0	2	0	0	1	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0017	2727	2	0	0	0	0	2	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0018	2757	2	2	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0019	2772	2	0	1	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0020	2757	2	0	0	2	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0021	2757	2	0	2	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0022	2757	2	2	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0023	2757	1	0	1	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0024	2757	1	0	1	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0025	2757	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0026	2757	1	0	0	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0027	2757	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0028	2742	1	0	0	0	1	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0029	2757	1	0	0	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0030	2757	1	0	0	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0031	2757	1	0	0	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0032	2757	1	0	0	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0033	2742	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0034	2757	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0035	2757	1	0	1	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0036	2772	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0037	2757	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0038	2727	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0039	2757	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0040	2757	1	0	0	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0041	2757	1	0	0	0	0	1	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0042	2757	1	0	1	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0043	2757	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0044	2757	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0045	2757	1	0	0	0	1	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	c0046	2772	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INF2_chr14_104684618_104727535	0/1	c0001	3750	187	39	37	86	7	17	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0002	3750	35	11	17	1	3	3	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0003	3738	26	0	6	10	2	8	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0004	3750	26	0	4	17	0	5	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0005	3750	8	7	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0006	3744	7	2	2	1	0	2	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0007	3750	6	0	1	5	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0008	3750	6	0	1	5	0	0	copy fasta	INF2	chr14	104684618	104727535