JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INF2_chr14_104684618_104727535	0/0	c0009	3750	5	0	0	3	0	2	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0010	3744	5	5	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0011	3750	4	0	0	4	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0012	3744	4	4	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0013	3738	4	4	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0014	3750	3	0	0	3	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0015	3750	3	3	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0016	3750	3	0	3	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0017	3750	3	3	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0018	3750	3	3	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0019	3744	3	0	1	1	1	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0020	3750	2	0	0	2	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0021	3750	2	0	2	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0022	3750	2	2	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0023	3750	2	0	0	2	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0024	3750	2	0	1	0	1	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0025	3750	2	0	2	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	1/0	c0026	3750	1	0	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0027	3750	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0028	3737	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0029	3750	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0030	3785	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0031	3750	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0032	3750	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0033	3750	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0034	3750	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0035	3750	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0036	3750	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0037	3750	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0038	3750	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0039	3750	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0040	3750	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0041	3750	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0042	3744	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0043	3744	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0044	3744	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0045	3744	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0046	3738	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0047	3738	1	0	0	0	1	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0048	3738	1	0	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0049	3738	1	0	0	0	1	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0050	3750	1	0	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0051	3750	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	c0052	3750	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
ING1_chr13_110708700_110728339	1/1	c0001	840	406	80	76	190	18	40	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	c0002	840	21	6	0	13	0	2	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	c0003	840	4	0	0	4	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	c0004	840	4	4	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	c0005	840	1	1	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	c0006	840	1	1	0	0	0	0	copy fasta	ING1	chr13	110708700	110728339