JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ING1_chr13_110708700_110728339	0/0	c0007	840	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING2_chr4_183500058_183517429	0/1	c0001	843	313	69	52	153	11	27	copy fasta	ING2	chr4	183500058	183517429
ING2_chr4_183500058_183517429	1/0	c0002	843	142	27	32	68	3	11	copy fasta	ING2	chr4	183500058	183517429
ING2_chr4_183500058_183517429	0/0	c0003	843	1	0	0	1	0	0	copy fasta	ING2	chr4	183500058	183517429
ING3_chr7_120945777_120982216	0/0	c0001	1257	290	74	55	128	7	26	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	c0002	1257	39	19	7	6	1	6	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	c0003	1269	1	0	0	1	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	c0004	1257	1	0	0	1	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	c0005	1257	1	1	0	0	0	0	copy fasta	ING3	chr7	120945777	120982216
ING4_chr12_6645301_6668119	1/1	c0001	747	381	70	75	182	12	40	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	0/0	c0002	747	20	16	2	2	0	0	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	0/0	c0003	747	2	0	2	0	0	0	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	0/0	c0004	747	1	0	1	0	0	0	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	0/0	c0005	747	1	0	0	1	0	0	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	0/0	c0006	747	1	0	0	1	0	0	copy fasta	ING4	chr12	6645301	6668119
ING5_chr2_241697039_241734478	1/1	c0001	723	386	94	59	175	14	42	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	c0002	723	2	1	1	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	c0003	723	2	0	2	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	c0004	723	2	0	2	0	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	c0005	723	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
ING5_chr2_241697039_241734478	0/0	c0006	723	1	1	0	0	0	0	copy fasta	ING5	chr2	241697039	241734478
INHA_chr2_219567310_219580711	1/1	c0001	1101	332	74	56	152	12	36	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	c0002	1101	81	6	25	41	4	5	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	c0003	1101	13	13	0	0	0	0	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	c0004	1101	3	0	1	0	0	2	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	c0005	1101	2	0	1	0	0	1	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	c0006	1101	1	0	0	1	0	0	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	c0007	1101	1	0	1	0	0	0	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	c0008	1101	1	1	0	0	0	0	copy fasta	INHA	chr2	219567310	219580711
INHBA_chr7_41680114_41708090	1/1	c0001	1281	368	89	73	147	14	43	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	c0002	1281	2	2	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	c0003	1281	1	0	0	0	0	1	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	c0004	1281	1	0	1	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	c0005	1281	1	1	0	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	c0006	1281	1	0	0	1	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBB_chr2_120341136_120356803	1/1	c0001	1224	230	46	54	87	13	28	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	c0002	1224	98	34	11	38	2	13	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	c0003	1224	95	2	15	74	1	3	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	c0004	1224	13	12	1	0	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	c0005	1225	6	2	2	1	0	1	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	c0006	1224	4	0	0	4	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	c0007	1225	3	1	0	2	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	c0008	1224	2	0	1	0	0	1	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	c0009	1225	1	0	0	1	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	c0010	1225	1	0	0	1	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	c0011	1224	1	1	0	0	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	c0012	1224	1	0	0	1	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	c0013	1224	1	0	0	1	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBC_chr12_57429784_57457062	1/1	c0001	1059	344	75	49	169	10	39	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	c0002	1059	48	10	19	12	2	5	copy fasta	INHBC	chr12	57429784	57457062