JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INHBC_chr12_57429784_57457062	0/0	c0003	1059	2	2	0	0	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	c0004	1059	1	1	0	0	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	c0005	1059	1	0	0	1	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBE_chr12_57450307_57463025	1/1	c0001	1053	441	99	80	209	11	40	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	c0002	1053	1	0	0	0	1	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	c0003	1053	1	0	0	0	0	1	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	c0004	1053	1	0	0	0	0	1	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	c0005	1053	1	1	0	0	0	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	c0006	1053	1	0	0	1	0	0	copy fasta	INHBE	chr12	57450307	57463025
INIP_chr9_112678926_112723117	1/1	c0001	315	372	82	70	166	14	38	copy fasta	INIP	chr9	112678926	112723117
INKA1_chr3_49798261_49810030	1/1	c0001	858	339	83	78	120	14	42	copy fasta	INKA1	chr3	49798261	49810030
INKA1_chr3_49798261_49810030	0/0	c0002	858	2	2	0	0	0	0	copy fasta	INKA1	chr3	49798261	49810030
INKA1_chr3_49798261_49810030	0/0	c0003	858	1	0	0	1	0	0	copy fasta	INKA1	chr3	49798261	49810030
INKA1_chr3_49798261_49810030	0/0	c0004	858	1	0	0	1	0	0	copy fasta	INKA1	chr3	49798261	49810030
INKA1_chr3_49798261_49810030	0/0	c0005	858	1	1	0	0	0	0	copy fasta	INKA1	chr3	49798261	49810030
INKA2_chr1_111717064_111744395	0/1	c0001	894	368	94	56	164	13	40	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	1/0	c0002	894	63	2	18	33	3	6	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	c0003	894	2	0	0	2	0	0	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	c0004	894	1	0	0	1	0	0	copy fasta	INKA2	chr1	111717064	111744395
INMT_chr7_30747135_30762602	0/1	c0001	792	140	2	20	101	5	11	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0002	792	45	9	2	26	0	8	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0003	792	40	10	5	22	1	2	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0004	792	36	5	13	6	4	8	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0005	792	34	18	11	0	2	3	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	1/0	c0006	792	32	14	3	4	4	6	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0007	792	30	0	0	30	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0008	792	15	1	13	0	1	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0009	792	14	10	4	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0010	792	10	8	2	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0011	792	5	0	3	0	0	2	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0012	792	5	5	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0013	792	4	3	1	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0014	792	4	0	0	0	0	4	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0015	792	4	0	0	3	1	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0016	792	2	0	0	0	0	2	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0017	792	2	2	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0018	792	2	0	0	2	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0019	792	1	0	0	0	0	1	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0020	792	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0021	792	1	0	1	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0022	792	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0023	792	1	0	0	0	0	1	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0024	792	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0025	792	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0026	792	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0027	792	1	0	0	1	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	c0028	792	1	0	0	1	0	0	copy fasta	INMT	chr7	30747135	30762602
INO80B_chr2_74450087_74462944	1/1	c0001	1071	324	87	74	110	16	35	copy fasta	INO80B	chr2	74450087	74462944
INO80B_chr2_74450087_74462944	0/0	c0002	1071	2	0	0	2	0	0	copy fasta	INO80B	chr2	74450087	74462944
INO80B_chr2_74450087_74462944	0/0	c0003	1071	1	1	0	0	0	0	copy fasta	INO80B	chr2	74450087	74462944