JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INO80B_chr2_74450087_74462944	0/0	c0004	1071	1	0	0	1	0	0	copy fasta	INO80B	chr2	74450087	74462944
INO80B_chr2_74450087_74462944	0/0	c0005	1071	1	0	0	0	0	1	copy fasta	INO80B	chr2	74450087	74462944
INO80B_chr2_74450087_74462944	0/0	c0006	1071	1	0	0	1	0	0	copy fasta	INO80B	chr2	74450087	74462944
INO80C_chr18_35463333_35502960	1/1	c0001	579	384	85	66	173	10	48	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	c0002	579	3	3	0	0	0	0	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	c0003	579	1	1	0	0	0	0	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	c0004	579	1	1	0	0	0	0	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	c0005	579	1	0	0	1	0	0	copy fasta	INO80C	chr18	35463333	35502960
INO80D_chr2_205988721_206091174	0/1	c0001	3084	127	27	35	45	8	11	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0002	3084	97	16	19	41	5	16	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	1/0	c0003	3084	77	29	10	29	2	6	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0004	3084	10	0	4	3	1	2	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0005	3084	4	4	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0006	3084	3	0	0	3	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0007	3084	3	0	0	3	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0008	3084	2	2	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0009	3084	2	1	1	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0010	3084	2	0	0	0	0	2	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0011	3084	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0012	3084	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0013	3084	1	0	1	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0014	3084	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0015	3084	1	1	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0016	3084	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	c0017	3084	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80E_chr16_29991241_30010791	1/1	c0001	735	326	73	61	146	14	30	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	c0002	735	11	11	0	0	0	0	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	c0003	735	1	0	0	0	0	1	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	c0004	735	1	0	0	0	0	1	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	c0005	735	1	0	1	0	0	0	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	c0006	735	1	0	0	1	0	0	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	c0007	735	1	0	0	1	0	0	copy fasta	INO80E	chr16	29991241	30010791
INO80_chr15_40973880_41121280	1/1	c0001	4671	261	70	52	102	10	25	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	c0002	4671	8	8	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	c0003	4671	2	2	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	c0004	4671	2	0	0	1	0	1	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	c0005	4671	1	0	1	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	c0006	4671	1	1	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	c0007	4671	1	1	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	c0008	4671	1	1	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	c0009	4671	1	1	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	c0010	4671	1	0	1	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	c0011	4671	1	0	0	0	0	1	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	c0012	4671	1	0	0	1	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	c0013	4671	1	0	0	0	0	1	copy fasta	INO80	chr15	40973880	41121280
INPP1_chr2_190338589_190376665	0/0	c0001	1200	132	19	15	81	5	12	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	c0002	1200	103	11	33	47	6	6	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/1	c0003	1200	59	0	10	31	4	13	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	c0004	1200	44	33	8	2	1	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	1/0	c0005	1200	42	8	4	27	0	2	copy fasta	INPP1	chr2	190338589	190376665