JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INPP1_chr2_190338589_190376665	0/0	c0006	1200	16	15	1	0	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	c0007	1200	10	0	3	6	0	1	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	c0008	1200	1	0	0	0	0	1	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	c0009	1200	1	1	0	0	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	c0010	1200	1	1	0	0	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	c0011	1200	1	0	0	0	0	1	copy fasta	INPP1	chr2	190338589	190376665
INPP4A_chr2_98439858_98599392	1/0	c0001	2919	158	47	33	49	7	21	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/1	c0002	2919	79	5	21	40	4	8	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0003	2919	11	11	0	0	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0004	2919	7	0	0	7	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0005	2919	4	2	2	0	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0006	2919	2	2	0	0	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0007	2919	2	0	1	0	1	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0008	2919	1	0	1	0	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0009	2919	1	0	1	0	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0010	2919	1	0	1	0	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0011	2919	1	1	0	0	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0012	2919	1	0	0	1	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0013	2919	1	0	1	0	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0014	2919	1	0	0	1	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0015	2919	1	1	0	0	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0016	2919	1	1	0	0	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0017	2919	1	0	1	0	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	c0018	2919	1	0	0	0	0	1	copy fasta	INPP4A	chr2	98439858	98599392
INPP4B_chr4_142018160_142851301	0/0	c0001	2775	47	40	4	1	1	1	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0002	2775	14	10	3	0	0	1	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0003	2775	6	0	3	3	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0004	2775	5	2	2	1	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0005	2775	5	3	1	1	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0006	2775	3	1	2	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0007	2775	2	0	0	2	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0008	2775	1	0	0	0	0	1	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0009	2775	1	0	0	1	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0010	2775	1	0	0	0	0	1	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0011	2775	1	0	0	0	0	1	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0012	2775	1	0	1	0	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0013	2775	1	0	0	1	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0014	2775	1	0	0	0	1	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	c0015	2775	1	0	0	0	0	1	copy fasta	INPP4B	chr4	142018160	142851301
INPP5A_chr10_132532787_132788480	1/0	c0001	1239	129	37	33	29	5	24	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	c0002	1239	37	2	9	16	5	5	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/1	c0003	1239	16	11	3	0	0	1	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	c0004	1239	8	6	2	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	c0005	1239	6	5	1	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	c0006	1239	2	2	0	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	c0007	1239	1	1	0	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	c0008	1239	1	0	0	1	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	c0009	1239	1	1	0	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	c0010	1239	1	1	0	0	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	c0011	1239	1	0	0	1	0	0	copy fasta	INPP5A	chr10	132532787	132788480