Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCA7_chr19_1035107_1070572	0/0	c0022	6441	1	1	0	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA8_chr17_68862289_68960392	0/1	c0001	4866	113	12	17	64	4	15	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	1/0	c0002	4866	25	9	8	2	2	3	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0003	4866	24	0	1	23	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0004	4866	17	3	2	4	4	4	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0005	4866	11	9	0	0	0	2	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0006	4866	9	2	3	4	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0007	4866	8	0	0	8	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0008	4866	7	6	1	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0009	4866	6	6	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0010	4866	3	3	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0011	4866	2	2	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0012	4866	2	2	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0013	4866	2	0	0	2	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0014	4866	2	0	1	0	0	1	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0015	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0016	4866	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0017	4866	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0018	4866	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0019	4866	1	0	1	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0020	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0021	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0022	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0023	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0024	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0025	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0026	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0027	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0028	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0029	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0030	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0031	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0032	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0033	4866	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0034	4866	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0035	4866	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0036	4866	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0037	4866	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0038	4866	1	0	0	0	1	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0039	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0040	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0041	4866	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0042	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0043	4866	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0044	4866	1	0	0	0	1	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0045	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0046	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0047	4866	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0048	4866	1	0	0	0	0	1	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	c0049	4866	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392