JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALG9_chr11_111777195_111876581	0/0	c0009	1857	1	1	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	c0010	1857	1	1	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALKAL1_chr8_52529037_52570430	1/1	c0001	390	389	90	71	168	14	44	copy fasta	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	c0002	390	4	3	1	0	0	0	copy fasta	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	c0003	390	2	1	0	1	0	0	copy fasta	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	c0004	390	1	0	0	1	0	0	copy fasta	ALKAL1	chr8	52529037	52570430
ALKAL2_chr2_274558_293091	1/1	c0001	459	413	92	76	179	16	48	copy fasta	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	c0002	459	2	2	0	0	0	0	copy fasta	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	c0003	459	1	0	0	1	0	0	copy fasta	ALKAL2	chr2	274558	293091
ALKBH1_chr14_77667404_77713023	1/1	c0001	1170	312	86	46	141	12	25	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	c0002	1170	24	2	10	7	2	3	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	c0003	1170	12	0	0	10	1	1	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	c0004	1170	3	0	2	0	1	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	c0005	1170	2	2	0	0	0	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	c0006	1170	1	0	0	0	0	1	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	c0007	1170	1	1	0	0	0	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	c0008	1170	1	0	0	0	0	1	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	c0009	1170	1	0	0	0	0	1	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	c0010	1170	1	1	0	0	0	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	c0011	1170	1	0	0	1	0	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	c0012	1170	1	0	0	1	0	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH2_chr12_109083189_109098472	1/1	c0001	786	447	81	81	222	16	45	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	c0002	786	10	5	0	4	0	1	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	c0003	786	8	8	0	0	0	0	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	c0004	786	2	0	0	2	0	0	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	c0005	786	2	0	2	0	0	0	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	c0006	786	1	0	1	0	0	0	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH3_chr11_43875831_43925274	0/0	c0001	861	196	22	34	107	9	24	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	c0002	861	93	57	17	14	3	2	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	c0003	861	51	11	11	17	2	10	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	c0004	861	27	5	15	5	0	2	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	c0005	861	2	0	0	2	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	1/0	c0006	861	2	1	0	0	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	c0007	861	1	0	1	0	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	c0008	861	1	1	0	0	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/1	c0009	861	1	0	0	0	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	c0010	861	1	0	0	1	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	c0011	861	1	1	0	0	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH4_chr7_102451238_102469863	1/1	c0001	909	351	87	67	145	17	33	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	c0002	909	48	0	13	21	1	13	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	c0003	909	3	3	0	0	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	c0004	909	1	1	0	0	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	c0005	909	1	1	0	0	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH5_chr17_18178828_18214954	1/1	c0001	1185	363	72	56	192	6	35	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	c0002	1185	54	26	14	2	4	8	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH5_chr17_18178828_18214954	0/0	c0003	1185	1	0	0	0	0	1	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH6_chr19_36004120_36019213	1/1	c0001	717	383	87	79	162	11	42	copy fasta	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	c0002	717	4	4	0	0	0	0	copy fasta	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	c0003	717	3	2	1	0	0	0	copy fasta	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	c0004	717	1	1	0	0	0	0	copy fasta	ALKBH6	chr19	36004120	36019213