JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INPP5A_chr10_132532787_132788480	0/0	c0012	1239	1	0	0	1	0	0	copy fasta	INPP5A	chr10	132532787	132788480
INPP5B_chr1_37855697_37952053	1/1	c0001	2742	162	65	21	60	2	12	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0002	2742	77	9	21	38	2	7	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0003	2742	56	2	14	30	5	5	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0004	2742	15	1	6	0	2	6	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0005	2742	10	0	2	7	0	1	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0006	2742	6	6	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0007	2742	4	0	0	4	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0008	2742	3	0	0	0	3	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0009	2742	2	2	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0010	2742	2	2	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0011	2742	2	0	0	2	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0012	2742	1	1	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0013	2742	1	0	0	1	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0014	2742	1	0	0	1	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0015	2742	1	0	0	1	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0016	2742	1	1	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0017	2742	1	1	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	c0018	2742	1	0	0	0	0	1	copy fasta	INPP5B	chr1	37855697	37952053
INPP5D_chr2_233055342_233212903	0/0	c0001	3570	141	45	17	60	4	15	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0002	3570	60	14	11	30	1	4	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0003	3570	26	5	8	2	3	8	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/1	c0004	3570	23	2	13	1	1	5	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	1/0	c0005	3570	16	11	2	0	0	2	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0006	3570	13	0	2	2	2	7	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0007	3570	3	1	1	0	0	1	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0008	3570	3	3	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0009	3570	2	0	0	0	0	2	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0010	3570	2	0	2	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0011	3570	2	0	2	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0012	3570	2	0	0	1	1	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0013	3570	2	0	0	2	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0014	3570	2	0	1	1	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0015	3570	1	0	0	0	0	1	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0016	3570	1	0	1	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0017	3570	1	1	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0018	3570	1	1	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0019	3570	1	0	0	0	0	1	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0020	3570	1	0	1	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0021	3570	1	0	1	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0022	3570	1	0	0	1	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0023	3570	1	0	0	1	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0024	3570	1	1	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0025	3570	1	1	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0026	3570	1	1	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	c0027	3570	1	0	0	1	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5E_chr9_136423619_136444845	1/0	c0001	1935	228	55	32	101	12	27	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/1	c0002	1935	50	0	19	20	3	7	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0003	1935	47	6	19	12	3	7	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0004	1935	8	6	2	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845