JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INPP5E_chr9_136423619_136444845	0/0	c0005	1935	7	5	2	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0006	1935	7	6	1	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0007	1935	4	4	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0008	1935	3	3	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0009	1935	3	3	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0010	1935	3	0	2	0	0	1	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0011	1935	2	2	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0012	1935	2	1	1	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0013	1935	2	2	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0014	1935	2	0	0	2	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0015	1935	1	0	1	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0016	1935	1	0	0	0	0	1	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0017	1935	1	0	1	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0018	1935	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0019	1935	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0020	1935	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0021	1935	1	0	0	1	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0022	1935	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0023	1935	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0024	1935	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0025	1935	1	0	0	1	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0026	1935	1	0	0	0	0	1	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0027	1935	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	c0028	1935	1	0	0	1	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5F_chr10_119721050_119834147	1/1	c0001	3399	172	56	37	63	3	11	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0002	3399	77	15	17	33	5	7	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0003	3399	47	6	8	16	3	14	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0004	3399	5	4	0	0	0	1	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0005	3399	5	0	0	5	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0006	3396	4	0	2	1	1	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0007	3399	2	1	1	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0008	3399	2	0	0	2	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0009	3399	2	1	1	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0010	3399	2	0	0	2	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0011	3399	1	0	0	1	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0012	3399	1	0	1	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0013	3396	1	0	0	0	1	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0014	3399	1	0	1	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0015	3399	1	0	0	0	0	1	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0016	3399	1	0	0	1	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0017	3399	1	1	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0018	3399	1	1	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0019	3399	1	1	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	c0020	3399	1	0	0	0	1	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5J_chr22_31117966_31139697	0/0	c0001	3021	156	6	31	94	5	20	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	1/0	c0002	3021	120	31	16	67	5	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0003	3021	56	21	15	2	5	13	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0004	3021	44	17	10	11	1	5	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0005	3021	14	14	0	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0006	3021	5	0	0	5	0	0	copy fasta	INPP5J	chr22	31117966	31139697