JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INPP5J_chr22_31117966_31139697	0/0	c0007	3021	3	0	0	3	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0008	3021	3	3	0	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0009	3021	2	0	0	0	0	2	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0010	3021	2	1	1	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0011	3021	2	0	2	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0012	3021	1	0	0	1	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0013	3021	1	0	0	1	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0014	3021	1	0	1	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0015	3021	1	1	0	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0016	3021	1	0	1	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0017	3021	1	0	0	0	0	1	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0018	3021	1	0	0	1	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0019	3021	1	0	0	1	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/1	c0020	3021	1	0	0	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0021	3021	1	1	0	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0022	3021	1	0	1	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0023	3021	1	0	0	1	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0024	3021	1	0	0	0	0	1	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0025	3021	1	1	0	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	c0026	3021	1	0	0	1	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5K_chr17_1489577_1521612	1/1	c0001	1347	390	80	76	180	13	39	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0002	1347	11	1	3	2	3	2	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0003	1347	2	2	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0004	1347	2	1	1	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0005	1347	2	2	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0006	1335	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0007	1347	1	0	0	0	0	1	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0008	1347	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0009	1347	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0010	1347	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0011	1347	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0012	1347	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0013	1347	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0014	1347	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0015	1347	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0016	1347	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0017	1347	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	c0018	1347	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPPL1_chr11_72219767_72244147	1/0	c0001	3777	173	37	36	63	9	27	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	c0002	3777	79	20	7	38	1	13	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	c0003	3777	46	25	9	11	1	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	c0004	3777	19	4	1	14	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	c0005	3777	9	0	0	8	1	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	c0006	3777	2	0	0	2	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	c0007	3777	1	0	0	1	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	c0008	3777	1	0	0	1	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	c0009	3777	1	1	0	0	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	c0010	3777	1	0	1	0	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/1	c0011	3777	1	0	0	0	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	c0012	3777	1	0	0	1	0	0	copy fasta	INPPL1	chr11	72219767	72244147