JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INPPL1_chr11_72219767_72244147	0/0	c0013	3777	1	1	0	0	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	c0014	3777	1	0	0	1	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	c0015	3777	1	1	0	0	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	c0016	3777	1	1	0	0	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INSC_chr11_15109923_15252208	0/0	c0001	1599	183	50	38	65	7	23	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0002	1599	34	16	4	12	1	1	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	1/1	c0003	1599	20	7	3	4	1	3	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0004	1599	8	8	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0005	1599	6	0	1	0	1	4	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0006	1599	3	3	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0007	1599	2	0	1	0	0	1	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0008	1599	2	2	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0009	1599	2	2	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0010	1599	1	0	0	1	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0011	1599	1	1	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0012	1599	1	0	0	1	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0013	1599	1	0	1	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0014	1599	1	0	1	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0015	1599	1	1	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0016	1599	1	0	0	1	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0017	1599	1	1	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0018	1599	1	1	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	c0019	1599	1	0	1	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSIG1_chr7_155292878_155315235	1/1	c0001	834	432	90	73	215	18	34	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	c0002	834	8	5	3	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	c0003	834	1	0	0	1	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	c0004	834	1	1	0	0	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	c0005	834	1	0	0	1	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	c0006	834	1	0	0	1	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG2_chr2_118083471_118115997	1/1	c0001	678	425	85	80	199	16	43	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	c0002	678	10	10	0	0	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	c0003	678	2	0	0	2	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	c0004	678	1	0	0	0	0	1	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	c0005	678	1	1	0	0	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	c0006	723	1	0	0	1	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSL3_chr19_17811512_17826519	0/0	c0001	396	157	33	11	96	1	16	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	1/0	c0002	396	134	11	31	61	8	22	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	0/1	c0003	396	85	39	28	0	7	10	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	0/0	c0004	396	72	17	12	41	0	2	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	0/0	c0005	396	2	0	0	2	0	0	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	0/0	c0006	396	1	0	0	1	0	0	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	0/0	c0007	396	1	0	0	1	0	0	copy fasta	INSL3	chr19	17811512	17826519
INSL4_chr9_5226419_5240304	1/1	c0001	420	258	17	56	140	12	31	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	c0002	420	120	34	21	52	2	11	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	c0003	420	18	16	2	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	c0004	420	11	11	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	c0005	420	8	8	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	c0006	420	5	5	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	c0007	420	5	4	1	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	c0008	420	1	1	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304