JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INSL4_chr9_5226419_5240304	0/0	c0009	420	1	0	1	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	c0010	420	1	0	1	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL5_chr1_66792740_66806276	0/1	c0001	408	405	74	67	211	14	38	copy fasta	INSL5	chr1	66792740	66806276
INSL5_chr1_66792740_66806276	1/0	c0002	408	42	19	13	0	3	6	copy fasta	INSL5	chr1	66792740	66806276
INSL5_chr1_66792740_66806276	0/0	c0003	408	1	0	0	0	1	0	copy fasta	INSL5	chr1	66792740	66806276
INSL5_chr1_66792740_66806276	0/0	c0004	408	1	1	0	0	0	0	copy fasta	INSL5	chr1	66792740	66806276
INSL5_chr1_66792740_66806276	0/0	c0005	408	1	0	0	1	0	0	copy fasta	INSL5	chr1	66792740	66806276
INSL6_chr9_5158868_5190639	1/1	c0001	642	324	41	71	156	8	46	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	c0002	642	36	34	2	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	c0003	642	9	8	1	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	c0004	642	3	0	3	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	c0005	642	2	2	0	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	c0006	642	2	2	0	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	c0007	642	2	2	0	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	c0008	642	1	1	0	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	c0009	642	1	1	0	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	c0010	642	1	1	0	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	c0011	642	1	0	1	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	c0012	642	1	1	0	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	c0013	642	1	1	0	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSM1_chr20_20363104_20375949	1/1	c0001	1533	399	79	62	199	16	41	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	c0002	1533	23	4	10	3	2	4	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	c0003	1533	7	6	1	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	c0004	1533	3	3	0	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	c0005	1533	1	0	1	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	c0006	1533	1	1	0	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	c0007	1533	1	0	0	1	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	c0008	1533	1	1	0	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	c0009	1533	1	1	0	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	c0010	1533	1	0	0	1	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	c0011	1533	1	0	1	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	c0012	1533	1	1	0	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	c0013	1533	1	0	1	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	c0014	1533	1	0	0	0	0	1	copy fasta	INSM1	chr20	20363104	20375949
INSM2_chr14_35529164_35542054	0/1	c0001	1701	380	81	65	177	11	45	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	c0002	1701	5	0	0	5	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	c0003	1701	3	0	0	3	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	c0004	1701	3	3	0	0	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	c0005	1701	2	0	0	2	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	c0006	1701	2	2	0	0	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	c0007	1701	1	0	0	0	1	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	1/0	c0008	1701	1	0	0	0	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	c0009	1701	1	0	0	0	0	1	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	c0010	1701	1	1	0	0	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	c0011	1701	1	1	0	0	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	c0012	1701	1	0	1	0	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	c0013	1701	1	0	0	1	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSRR_chr1_156835063_156864117	1/1	c0001	3894	247	53	59	95	11	27	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0002	3894	58	17	8	23	0	10	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0003	3894	8	8	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117