JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INSRR_chr1_156835063_156864117	0/0	c0004	3894	7	3	2	0	1	1	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0005	3894	3	3	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0006	3894	3	3	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0007	3894	2	2	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0008	3894	2	2	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0009	3894	2	2	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0010	3894	2	2	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0011	3894	1	0	1	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0012	3894	1	0	0	0	0	1	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0013	3894	1	0	0	1	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0014	3894	1	0	0	0	1	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0015	3894	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0016	3894	1	0	0	0	0	1	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0017	3894	1	0	0	0	0	1	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0018	3894	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0019	3894	1	0	1	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0020	3894	1	0	0	1	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0021	3894	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0022	3894	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0023	3856	1	0	0	1	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0024	3894	1	0	0	1	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0025	3894	1	0	0	0	1	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0026	3894	1	0	0	1	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0027	3894	1	0	1	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0028	3894	1	0	0	1	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0029	3894	1	0	1	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0030	3894	1	0	1	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0031	3894	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	c0032	3894	1	0	0	0	0	1	copy fasta	INSRR	chr1	156835063	156864117
INSR_chr19_7107265_7299414	0/1	c0001	4149	70	5	23	25	3	13	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0002	4149	41	7	18	10	2	4	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0003	4149	36	3	4	23	2	4	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0004	4149	17	0	5	8	1	3	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0005	4149	13	8	2	2	1	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0006	4149	9	7	0	0	0	2	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0007	4149	8	2	3	0	0	3	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0008	4149	7	5	0	2	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0009	4149	6	4	0	2	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0010	4149	6	1	0	4	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0011	4149	6	4	2	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0012	4149	5	5	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0013	4149	5	2	1	0	0	2	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0014	4149	4	3	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0015	4149	3	0	0	3	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0016	4149	3	1	0	0	0	2	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0017	4149	2	0	2	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0018	4149	2	2	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0019	4149	2	0	0	2	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0020	4149	2	0	1	0	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0021	4149	2	0	1	0	1	0	copy fasta	INSR	chr19	7107265	7299414