JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INSR_chr19_7107265_7299414	0/0	c0022	4149	2	0	1	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0023	4149	2	2	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0024	4149	2	2	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0025	4149	2	1	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0026	4149	2	0	2	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0027	4149	2	1	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0028	4149	2	1	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0029	4149	2	2	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0030	4149	2	2	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	1/0	c0031	4149	1	0	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0032	4149	1	0	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0033	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0034	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0035	4149	1	0	0	0	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0036	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0037	4149	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0038	4149	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0039	4149	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0040	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0041	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0042	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0043	4149	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0044	4149	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0045	4149	1	0	0	0	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0046	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0047	4149	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0048	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0049	4149	1	0	0	0	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0050	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0051	4149	1	0	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0052	4149	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0053	4149	1	0	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0054	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0055	4149	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0056	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0057	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0058	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0059	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0060	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0061	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0062	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	c0063	4149	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSYN1_chr15_73730458_73758351	1/0	c0001	882	237	74	47	87	8	20	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/1	c0002	882	157	18	31	81	4	22	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	c0003	882	5	0	0	5	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	c0004	882	2	2	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	c0005	882	2	0	0	0	2	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	c0006	882	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	c0007	882	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	c0008	882	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351