JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INSYN2A_chr10_127130430_127201591	1/1	c0001	1440	117	52	19	39	2	3	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	c0002	1440	115	17	33	48	5	12	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	c0003	1440	34	5	13	3	5	8	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	c0004	1440	4	3	1	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	c0005	1440	4	0	0	4	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	c0006	1440	4	3	0	1	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	c0007	1440	2	2	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	c0008	1440	2	2	0	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	c0009	1440	1	0	0	1	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	c0010	1440	1	0	0	0	0	1	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2B_chr5_169856303_169985495	1/0	c0001	1608	176	52	17	87	5	14	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/1	c0002	1608	131	38	33	34	11	14	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	c0003	1608	5	0	0	0	0	5	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	c0004	1608	2	0	0	2	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	c0005	1608	1	0	1	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	c0006	1608	1	0	1	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	c0007	1608	1	0	0	0	0	1	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	c0008	1608	1	0	0	1	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INS_chr11_2154779_2166209	1/1	c0001	333	363	84	76	145	18	38	copy fasta	INS	chr11	2154779	2166209
INS_chr11_2154779_2166209	0/0	c0002	333	6	6	0	0	0	0	copy fasta	INS	chr11	2154779	2166209
INS_chr11_2154779_2166209	0/0	c0003	333	5	0	0	5	0	0	copy fasta	INS	chr11	2154779	2166209
INS_chr11_2154779_2166209	0/0	c0004	333	1	1	0	0	0	0	copy fasta	INS	chr11	2154779	2166209
INS_chr11_2154779_2166209	0/0	c0005	333	1	1	0	0	0	0	copy fasta	INS	chr11	2154779	2166209
INTS10_chr8_19812416_19857067	1/1	c0001	2133	276	58	50	119	14	33	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0002	2133	116	27	21	53	2	13	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0003	2133	10	7	3	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0004	2133	5	0	0	5	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0005	2133	1	0	1	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0006	2133	1	1	0	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0007	2133	1	1	0	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0008	2133	1	1	0	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0009	2133	1	0	1	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0010	2133	1	1	0	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0011	2133	1	0	1	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0012	2133	1	1	0	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0013	2520	1	0	0	0	1	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0014	2452	1	0	0	0	1	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0015	2133	1	0	0	1	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0016	2133	1	1	0	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	c0017	2133	1	0	1	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS11_chr1_1306600_1329660	0/0	c0001	1803	177	27	25	94	6	25	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	1/0	c0002	1803	96	46	6	37	0	6	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/1	c0003	1803	56	6	25	1	8	15	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	c0004	1803	6	5	1	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	c0005	1803	6	0	2	0	2	2	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	c0006	1803	3	0	0	3	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	c0007	1803	2	2	0	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	c0008	1803	2	2	0	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	c0009	1803	1	0	0	1	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	c0010	1803	1	1	0	0	0	0	copy fasta	INTS11	chr1	1306600	1329660