JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INTS11_chr1_1306600_1329660	0/0	c0011	1803	1	1	0	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	c0012	1803	1	1	0	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	c0013	1803	1	1	0	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	c0014	1803	1	0	1	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS12_chr4_105677627_105713689	1/1	c0001	1389	289	83	46	130	13	15	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	c0002	1389	10	0	8	0	1	1	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	c0003	1389	5	3	2	0	0	0	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	c0004	1389	3	3	0	0	0	0	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	c0005	1389	1	1	0	0	0	0	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	c0006	1389	1	0	0	1	0	0	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	c0007	1389	1	0	0	1	0	0	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	c0008	1389	1	0	0	1	0	0	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	c0009	1389	1	0	0	1	0	0	copy fasta	INTS12	chr4	105677627	105713689
INTS13_chr12_26900181_26942981	0/1	c0001	2121	240	52	32	116	10	29	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	1/0	c0002	2121	143	37	36	47	6	16	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	c0003	2121	1	1	0	0	0	0	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	c0004	2121	1	1	0	0	0	0	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	c0005	2121	1	0	0	1	0	0	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	c0006	2121	1	0	0	0	0	1	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	c0007	2121	1	1	0	0	0	0	copy fasta	INTS13	chr12	26900181	26942981
INTS14_chr15_65573757_65616131	1/1	c0001	1557	318	92	52	123	11	38	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	c0002	1557	2	0	0	0	1	1	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	c0003	1557	1	0	0	1	0	0	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	c0004	1557	1	0	0	0	0	1	copy fasta	INTS14	chr15	65573757	65616131
INTS15_chr7_6585021_6613726	0/0	c0001	1350	262	79	55	95	11	22	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	1/0	c0002	1350	101	4	8	65	3	20	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/1	c0003	1350	16	1	11	0	2	1	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	c0004	1350	5	5	0	0	0	0	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	c0005	1350	4	2	2	0	0	0	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	c0006	1350	3	3	0	0	0	0	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	c0007	1350	1	0	0	1	0	0	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	c0008	1350	1	0	0	1	0	0	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	c0009	1350	1	0	0	0	0	1	copy fasta	INTS15	chr7	6585021	6613726
INTS1_chr7_1465277_1509389	0/1	c0001	6573	129	32	22	57	8	9	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	1/0	c0002	6573	103	14	34	37	4	13	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0003	6573	8	6	2	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0004	6573	7	1	0	6	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0005	6573	6	4	1	0	1	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0006	6573	4	3	1	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0007	6573	3	3	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0008	6573	3	0	0	0	0	3	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0009	6573	3	3	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0010	6573	3	3	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0011	6573	3	1	2	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0012	6573	2	0	0	0	0	2	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0013	6573	2	0	2	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0014	6573	2	2	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0015	6573	2	2	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0016	6573	2	0	1	0	1	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0017	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389