JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INTS1_chr7_1465277_1509389	0/0	c0018	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0019	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0020	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0021	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0022	6573	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0023	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0024	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0025	6573	1	0	1	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0026	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0027	6573	1	0	1	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0028	6573	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0029	6573	1	0	1	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0030	6573	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0031	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0032	6528	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0033	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0034	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0035	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0036	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0037	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0038	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0039	6573	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0040	6573	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0041	6573	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0042	6573	1	0	0	0	0	1	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0043	6573	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0044	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0045	6573	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0046	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0047	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0048	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0049	6573	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	c0050	6573	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS2_chr17_61860367_61932982	0/1	c0001	3591	303	79	54	130	12	27	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	c0002	3591	51	1	5	37	0	8	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	c0003	3591	4	4	0	0	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	c0004	3591	2	0	0	2	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	c0005	3591	1	0	1	0	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	c0006	3591	1	0	0	1	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	c0007	3591	1	0	0	1	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	1/0	c0008	3591	1	0	0	0	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	c0009	3591	1	0	0	0	0	1	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	c0010	3591	1	0	0	1	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS3_chr1_153723050_153779808	0/1	c0001	3129	298	53	55	141	11	37	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	c0002	3129	43	30	5	3	1	4	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	c0003	3129	4	4	0	0	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	c0004	3129	1	1	0	0	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	c0005	3113	1	1	0	0	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	c0006	3129	1	0	0	0	0	1	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	c0007	3129	1	1	0	0	0	0	copy fasta	INTS3	chr1	153723050	153779808