JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALKBH6_chr19_36004120_36019213	0/0	c0005	717	1	0	0	0	1	0	copy fasta	ALKBH6	chr19	36004120	36019213
ALKBH7_chr19_6367794_6380250	1/1	c0001	666	362	87	66	161	13	33	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	c0002	666	5	0	3	0	1	1	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	c0003	666	1	1	0	0	0	0	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	c0004	666	1	1	0	0	0	0	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	c0005	666	1	0	1	0	0	0	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	c0006	666	1	0	0	1	0	0	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	c0007	666	1	1	0	0	0	0	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH8_chr11_107497727_107570735	0/1	c0001	1995	238	29	43	127	11	27	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	1/0	c0002	1995	96	13	22	56	1	3	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0003	1995	20	19	1	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0004	1995	10	8	2	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0005	1995	5	5	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0006	1995	5	0	0	5	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0007	1995	4	4	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0008	1995	4	0	1	0	1	2	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0009	1995	3	3	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0010	1995	2	0	2	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0011	1995	2	0	0	0	1	1	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0012	1995	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0013	1995	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0014	1995	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0015	1995	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0016	1995	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0017	1995	1	0	0	0	0	1	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0018	1995	1	0	0	1	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0019	1995	1	0	0	1	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0020	1995	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0021	1995	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	c0022	1995	1	0	1	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALK_chr2_29187774_29926586	0/0	c0001	4863	5	1	3	1	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0002	4863	4	4	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0003	4863	3	0	2	1	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0004	4863	3	3	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0005	4863	3	2	1	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0006	4863	3	2	1	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0007	4863	2	0	1	1	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0008	4863	2	2	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0009	4863	2	2	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0010	4863	2	2	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0011	4863	2	2	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0012	4863	2	1	0	1	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0013	4863	2	2	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0014	4863	1	0	0	0	1	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0015	4863	1	0	0	0	1	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0016	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0017	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0018	4863	1	0	1	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0019	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0020	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586