JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INTS4_chr11_77873720_77999668	1/1	c0001	2892	270	50	49	136	12	21	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	c0002	2892	74	16	12	32	4	10	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	c0003	2892	6	6	0	0	0	0	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	c0004	2892	4	4	0	0	0	0	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	c0005	2892	2	2	0	0	0	0	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	c0006	2892	2	2	0	0	0	0	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	c0007	2892	1	0	1	0	0	0	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	c0008	2892	1	1	0	0	0	0	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	c0009	2892	1	1	0	0	0	0	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	c0010	2892	1	0	0	0	0	1	copy fasta	INTS4	chr11	77873720	77999668
INTS5_chr11_62641848_62658302	1/1	c0001	3060	340	85	70	131	16	36	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0002	3060	11	0	0	11	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0003	3060	3	3	0	0	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0004	3060	2	0	2	0	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0005	3060	2	0	0	2	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0006	3060	1	0	0	1	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0007	3060	1	0	1	0	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0008	3060	1	0	0	0	0	1	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0009	3060	1	0	1	0	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0010	3060	1	1	0	0	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0011	3130	1	1	0	0	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0012	3060	1	1	0	0	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0013	3060	1	0	0	0	0	1	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0014	3060	1	1	0	0	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	c0015	3060	1	0	0	1	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS6L_chrX_135515660_135587510	1/1	c0001	2697	183	41	33	83	7	17	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	c0002	2697	32	15	0	15	0	2	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	c0003	2697	21	4	3	10	2	2	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	c0004	2697	3	0	3	0	0	0	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	c0005	2696	1	0	0	1	0	0	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	c0006	2699	1	0	0	1	0	0	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	c0007	2697	1	0	0	0	0	1	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	c0008	2696	1	0	0	1	0	0	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	c0009	2697	1	0	0	1	0	0	copy fasta	INTS6L	chrX	135515660	135587510
INTS6_chr13_51356577_51458036	1/1	c0001	2664	338	81	67	138	12	38	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	c0002	2664	17	0	1	12	0	4	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	c0003	2664	1	1	0	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	c0004	2664	1	0	0	1	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	c0005	2664	1	0	0	1	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS7_chr1_211935403_212040557	1/1	c0001	2889	328	61	62	144	15	44	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	c0002	2889	8	8	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	c0003	2889	3	3	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	c0004	2889	3	2	0	0	1	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	c0005	2889	2	0	0	2	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	c0006	2889	2	0	0	2	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	c0007	2889	1	1	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	c0008	2889	1	0	0	1	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	c0009	2889	1	0	0	1	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	c0010	2889	1	0	0	1	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	c0011	2889	1	0	0	1	0	0	copy fasta	INTS7	chr1	211935403	212040557