JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
INTS7_chr1_211935403_212040557	0/0	c0012	2889	1	1	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS8_chr8_94818287_94886746	1/1	c0001	2988	145	45	16	65	5	12	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	c0002	2988	125	26	24	53	5	17	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	c0003	2988	32	19	11	0	0	2	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	c0004	2988	2	2	0	0	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	c0005	2988	1	0	0	1	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	c0006	2988	1	0	0	1	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	c0007	2988	1	0	1	0	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	c0008	2988	1	0	0	0	0	1	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	c0009	2988	1	0	0	1	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	c0010	2988	1	0	0	1	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS9_chr8_28762661_28894969	1/1	c0001	1977	344	82	61	152	11	36	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	c0002	1977	4	4	0	0	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	c0003	1977	3	2	1	0	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	c0004	1977	1	1	0	0	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	c0005	1977	1	1	0	0	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	c0006	1977	1	0	0	1	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	c0007	1977	1	0	0	1	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	c0008	1977	1	1	0	0	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	c0009	1977	1	0	0	0	1	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	c0010	1977	1	1	0	0	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTU_chr4_127627957_127731737	0/1	c0001	2829	123	44	29	28	7	14	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	1/0	c0002	2829	117	16	24	58	7	11	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0003	2829	69	0	7	62	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0004	2829	18	16	2	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0005	2829	10	0	0	10	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0006	2829	6	5	1	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0007	2829	3	3	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0008	2829	3	3	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0009	2829	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0010	2829	1	0	0	0	0	1	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0011	2829	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0012	2829	1	0	0	0	0	1	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0013	2829	1	0	1	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0014	2829	1	0	0	0	0	1	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0015	2829	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0016	2829	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	c0017	2829	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INVS_chr9_100094243_100307175	0/1	c0001	3198	94	39	21	21	4	8	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	1/0	c0002	3198	72	21	19	20	5	6	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	c0003	3198	7	2	4	0	1	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	c0004	3198	2	2	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	c0005	3198	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	c0006	3198	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	c0007	3198	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	c0008	3198	1	0	1	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	c0009	3198	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	c0010	3198	1	0	1	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	c0011	4195	1	0	0	1	0	0	copy fasta	INVS	chr9	100094243	100307175
IP6K1_chr3_49719294_49791542	1/1	c0001	1326	254	80	47	94	10	21	copy fasta	IP6K1	chr3	49719294	49791542