JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IP6K1_chr3_49719294_49791542	0/0	c0002	1326	3	3	0	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	c0003	1326	1	0	1	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	c0004	1326	1	1	0	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	c0005	1326	1	0	0	0	0	1	copy fasta	IP6K1	chr3	49719294	49791542
IP6K2_chr3_48683003_48722221	0/1	c0001	1281	160	35	31	63	6	24	copy fasta	IP6K2	chr3	48683003	48722221
IP6K2_chr3_48683003_48722221	1/0	c0002	1281	89	47	8	21	8	4	copy fasta	IP6K2	chr3	48683003	48722221
IP6K2_chr3_48683003_48722221	0/0	c0003	1281	9	0	5	0	2	2	copy fasta	IP6K2	chr3	48683003	48722221
IP6K2_chr3_48683003_48722221	0/0	c0004	1281	3	3	0	0	0	0	copy fasta	IP6K2	chr3	48683003	48722221
IP6K2_chr3_48683003_48722221	0/0	c0005	1281	1	1	0	0	0	0	copy fasta	IP6K2	chr3	48683003	48722221
IP6K3_chr6_33716662_33751905	0/0	c0001	1233	161	8	33	82	8	30	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	1/0	c0002	1233	59	13	13	25	3	4	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0003	1233	46	26	7	11	2	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0004	1233	30	27	2	0	1	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/1	c0005	1233	24	7	6	8	2	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0006	1233	12	3	2	4	0	3	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0007	1233	6	6	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0008	1233	6	0	4	0	2	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0009	1233	3	3	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0010	1233	2	0	0	2	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0011	1233	2	1	1	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0012	1233	2	0	0	1	0	1	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0013	1233	2	2	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0014	1233	2	0	2	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0015	1233	1	0	0	1	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0016	1233	1	0	0	0	0	1	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0017	1233	1	1	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0018	1233	1	0	0	1	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0019	1233	1	0	0	1	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0020	1233	1	1	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0021	1233	1	1	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0022	1233	1	0	0	0	0	1	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	c0023	1233	1	1	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IPCEF1_chr6_154149496_154361803	1/1	c0001	1317	244	81	47	77	5	32	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	c0002	1317	10	2	5	0	3	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	c0003	1317	5	5	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	c0004	1317	2	2	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	c0005	1317	1	1	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	c0006	1317	1	0	0	1	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	c0007	1317	1	1	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPMK_chr10_58186517_58272894	1/1	c0001	1251	267	79	47	104	4	31	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	c0002	1251	68	5	5	51	0	7	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	c0003	1251	5	4	1	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	c0004	1251	2	1	1	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	c0005	1251	1	0	0	1	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	c0006	1251	1	0	0	1	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	c0007	1251	1	1	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	c0008	1251	1	0	0	1	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPO11_chr5_62407763_62633582	1/1	c0001	2928	179	32	29	91	9	16	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	c0002	2928	106	26	19	47	4	10	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	c0003	2928	32	6	5	18	3	0	copy fasta	IPO11	chr5	62407763	62633582