JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IPO11_chr5_62407763_62633582	0/0	c0004	2928	3	3	0	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	c0005	2928	2	2	0	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	c0006	2928	2	2	0	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	c0007	2928	1	1	0	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	c0008	2928	1	0	0	1	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	c0009	2928	1	1	0	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	c0010	2928	1	0	0	1	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	c0011	2928	1	1	0	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	c0012	2928	1	0	1	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO13_chr1_43941950_43973022	1/0	c0001	2892	183	61	20	83	2	16	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/1	c0002	2892	114	6	25	65	3	14	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0003	2892	38	0	3	33	0	2	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0004	2892	6	6	0	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0005	2892	5	4	1	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0006	2892	4	0	3	0	1	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0007	2892	2	1	1	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0008	2892	2	2	0	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0009	2892	2	0	0	2	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0010	2892	1	0	1	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0011	2892	1	1	0	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0012	2892	1	0	0	1	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0013	2892	1	1	0	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0014	2892	1	0	0	1	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0015	2892	1	1	0	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0016	2892	1	1	0	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0017	2892	1	0	0	1	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0018	2892	1	1	0	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0019	2892	1	0	0	1	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0020	2892	1	1	0	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	c0021	2892	1	0	0	1	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO4_chr14_24175219_24193816	0/0	c0001	3246	155	14	21	97	5	18	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0002	3246	86	8	2	71	1	4	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	1/1	c0003	3246	80	21	25	11	7	14	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0004	3246	47	4	18	16	2	7	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0005	3246	13	10	0	3	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0006	3246	7	3	1	3	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0007	3246	5	4	1	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0008	3246	4	3	0	1	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0009	3246	4	2	0	2	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0010	3246	4	0	0	0	0	4	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0011	3246	4	0	0	4	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0012	3246	4	4	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0013	3246	3	3	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0014	3246	3	2	0	0	1	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0015	3246	2	2	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0016	3246	1	0	0	1	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0017	3246	1	1	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0018	3246	1	1	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0019	3246	1	1	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	c0020	3246	1	0	0	1	0	0	copy fasta	IPO4	chr14	24175219	24193816