JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IQANK1_chr8_143729139_143795645	0/0	c0027	1683	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0028	1683	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0029	1683	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0030	1683	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0031	1683	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0032	1683	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0033	1683	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0034	1683	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	c0035	1683	1	0	0	1	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQCA1L_chr7_151185873_151210496	0/0	c0001	2457	49	9	5	27	0	8	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0002	2457	34	3	8	22	0	1	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0003	2456	26	0	5	12	3	6	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0004	2457	26	3	1	22	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0005	2456	21	2	11	2	0	6	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0006	2457	19	2	3	12	0	2	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0007	2457	17	0	0	15	1	1	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0008	2457	14	0	6	1	1	6	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0009	2457	13	3	1	9	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	1/0	c0010	2457	12	0	7	2	1	1	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0011	2456	11	11	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0012	2456	11	0	2	7	0	2	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/1	c0013	2457	10	1	0	8	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0014	2457	9	4	1	2	0	2	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0015	2456	9	0	8	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0016	2457	6	2	4	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0017	2457	6	0	1	5	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0018	2457	6	0	3	0	3	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0019	2456	6	2	3	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0020	2457	6	0	0	6	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0021	2457	6	0	1	4	1	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0022	2456	5	0	2	0	0	3	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0023	2457	5	1	0	4	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0024	2456	5	1	1	2	0	1	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0025	2456	5	0	0	5	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0026	2456	4	4	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0027	2457	4	4	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0028	2456	3	0	1	0	2	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0029	2457	3	2	0	0	1	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0030	2456	3	0	3	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0031	2457	3	0	0	3	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0032	2457	2	2	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0033	2457	2	2	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0034	2457	2	2	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0035	2456	2	0	0	2	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0036	2456	2	0	0	1	0	1	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0037	2456	2	0	0	2	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0038	2457	2	0	0	2	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0039	2457	2	2	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0040	2457	2	0	0	0	0	2	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0041	2456	2	2	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496