JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IQCA1L_chr7_151185873_151210496	0/0	c0042	2456	2	1	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0043	2456	2	1	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0044	2457	2	0	2	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0045	2457	2	0	1	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0046	2457	2	0	0	1	1	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0047	2457	2	0	2	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0048	2457	2	0	0	2	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0049	2457	2	0	0	2	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0050	2468	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0051	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0052	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0053	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0054	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0055	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0056	2457	1	0	1	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0057	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0058	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0059	2457	1	0	0	0	0	1	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0060	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0061	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0062	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0063	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0064	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0065	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0066	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0067	2456	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0068	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0069	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0070	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0071	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0072	2457	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0073	2456	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0074	2456	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0075	2456	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0076	2456	1	0	0	0	0	1	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0077	2457	1	0	1	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0078	2457	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0079	2457	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0080	2457	1	0	1	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0081	2456	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0082	2457	1	0	0	0	0	1	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0083	2457	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0084	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0085	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0086	2456	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0087	2456	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0088	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0089	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0090	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0091	2457	1	0	0	0	0	1	copy fasta	IQCA1L	chr7	151185873	151210496