JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IQCA1L_chr7_151185873_151210496	0/0	c0092	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0093	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0094	2457	1	0	0	0	1	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0095	2456	1	0	0	0	1	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0096	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0097	2456	1	0	1	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0098	2457	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0099	2457	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0100	2457	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0101	2457	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0102	2456	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0103	2457	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	c0104	2457	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1_chr2_236319151_236512476	1/1	c0001	2469	130	47	31	32	4	14	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0002	2469	18	14	4	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0003	2469	16	0	0	16	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0004	2469	12	0	6	0	2	4	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0005	2469	6	6	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0006	2469	4	0	0	4	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0007	2469	2	0	0	2	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0008	2469	2	2	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0009	2469	2	2	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0010	2469	2	1	1	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0011	2469	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0012	2469	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0013	2469	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0014	2469	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0015	2469	1	0	1	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0016	2469	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0017	2469	1	0	0	1	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0018	2469	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0019	2469	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0020	2469	1	0	0	1	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0021	2469	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0022	2469	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0023	2469	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	c0024	2469	1	0	1	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCB1_chr3_121764761_121840060	1/0	c0001	1797	124	22	29	55	7	10	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	c0002	1797	88	39	11	30	1	7	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	c0003	1797	73	15	21	20	4	13	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/1	c0004	1797	12	3	4	0	2	2	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	c0005	1797	3	0	0	3	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	c0006	1797	2	2	0	0	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	c0007	1780	1	0	0	1	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	c0008	1797	1	0	0	1	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	c0009	1797	1	0	0	1	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	c0010	1797	1	0	1	0	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	c0011	1797	1	1	0	0	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	c0012	1797	1	0	0	1	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCC_chr1_32200671_32213682	1/0	c0001	1401	241	64	41	94	9	32	copy fasta	IQCC	chr1	32200671	32213682