JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IQCC_chr1_32200671_32213682	0/0	c0002	1401	98	25	20	43	1	9	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/1	c0003	1401	68	1	6	53	3	4	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/0	c0004	1401	1	0	0	0	0	1	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/0	c0005	1401	1	1	0	0	0	0	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/0	c0006	1401	1	0	0	0	1	0	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/0	c0007	1401	1	0	1	0	0	0	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/0	c0008	1401	1	1	0	0	0	0	copy fasta	IQCC	chr1	32200671	32213682
IQCD_chr12_113190446_113226094	1/1	c0001	1350	274	72	50	110	10	30	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	c0002	1350	40	2	0	37	0	1	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	c0003	1350	8	8	0	0	0	0	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	c0004	1350	4	4	0	0	0	0	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	c0005	1350	2	0	0	0	0	2	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	c0006	1350	1	0	0	0	0	1	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	c0007	1350	1	1	0	0	0	0	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	c0008	1350	1	1	0	0	0	0	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	c0009	1350	1	0	0	1	0	0	copy fasta	IQCD	chr12	113190446	113226094
IQCE_chr7_2553979_2619728	0/0	c0001	2088	104	14	18	51	5	16	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0002	2088	82	0	9	68	0	5	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	1/0	c0003	2088	50	14	10	19	2	4	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0004	2088	37	4	6	19	4	4	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/1	c0005	2088	30	1	14	11	1	2	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0006	2088	10	7	3	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0007	2088	10	0	7	0	2	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0008	2088	10	10	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0009	2088	7	6	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0010	2088	7	5	2	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0011	2088	5	2	1	0	1	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0012	2088	5	5	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0013	2088	4	4	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0014	2088	4	0	0	4	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0015	2088	3	3	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0016	2088	3	3	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0017	2088	2	0	1	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0018	2088	2	2	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0019	2088	2	0	1	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0020	2088	2	2	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0021	2088	2	0	0	0	0	2	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0022	2088	2	2	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0023	2088	2	0	0	2	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0024	2088	2	0	2	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0025	2088	2	1	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0026	2088	1	0	0	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0027	2088	1	0	0	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0028	2088	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0029	2088	1	0	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0030	2088	1	0	0	0	1	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0031	2088	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0032	2088	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0033	2088	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0034	2088	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728