JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALK_chr2_29187774_29926586	0/0	c0021	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0022	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0023	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0024	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0025	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0026	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0027	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0028	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0029	4863	1	0	1	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0030	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0031	4863	1	0	0	0	0	1	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0032	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0033	4863	1	0	0	0	1	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0034	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0035	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0036	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0037	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0038	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0039	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0040	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0041	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0042	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0043	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0044	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0045	4863	1	0	1	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0046	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0047	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0048	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0049	4863	1	0	1	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0050	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0051	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0052	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0053	4863	1	0	1	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0054	4863	1	0	0	0	0	1	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0055	4863	1	0	0	0	1	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0056	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0057	4863	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	c0058	4863	1	0	1	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALLC_chr2_3653200_3707671	1/0	c0001	1176	116	25	34	44	4	8	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	c0002	1173	61	13	12	25	4	7	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/1	c0003	1173	59	22	15	14	4	3	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	c0004	1176	16	8	0	8	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	c0005	1173	6	6	0	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	c0006	1173	3	3	0	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	c0007	1173	3	2	1	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	c0008	1173	2	2	0	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	c0009	1173	1	1	0	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	c0010	1173	1	1	0	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	c0011	1173	1	1	0	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	c0012	1176	1	0	0	1	0	0	copy fasta	ALLC	chr2	3653200	3707671