JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IQCE_chr7_2553979_2619728	0/0	c0035	2088	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0036	2088	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0037	2088	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0038	2088	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0039	2088	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0040	2088	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0041	2088	1	0	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0042	2088	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0043	2025	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0044	2088	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0045	2088	1	0	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0046	2088	1	0	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0047	2088	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0048	2088	1	0	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0049	2088	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0050	2088	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0051	2088	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	c0052	2088	1	0	0	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCF1_chr3_51889876_51908353	1/1	c0001	618	322	86	54	140	12	28	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	c0002	618	24	5	8	3	5	3	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	c0003	618	5	2	0	0	0	3	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	c0004	618	3	0	0	3	0	0	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	c0005	618	1	1	0	0	0	0	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	c0006	618	1	0	0	0	1	0	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	c0007	618	1	0	0	0	0	1	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	c0008	618	1	0	0	0	0	1	copy fasta	IQCF1	chr3	51889876	51908353
IQCF2_chr3_51856615_51868424	1/1	c0001	495	412	86	75	196	18	35	copy fasta	IQCF2	chr3	51856615	51868424
IQCF2_chr3_51856615_51868424	0/0	c0002	495	5	1	0	0	0	4	copy fasta	IQCF2	chr3	51856615	51868424
IQCF2_chr3_51856615_51868424	0/0	c0003	495	5	5	0	0	0	0	copy fasta	IQCF2	chr3	51856615	51868424
IQCF2_chr3_51856615_51868424	0/0	c0004	495	2	0	1	0	0	1	copy fasta	IQCF2	chr3	51856615	51868424
IQCF2_chr3_51856615_51868424	0/0	c0005	495	1	0	0	0	0	1	copy fasta	IQCF2	chr3	51856615	51868424
IQCF2_chr3_51856615_51868424	0/0	c0006	495	1	0	0	0	0	1	copy fasta	IQCF2	chr3	51856615	51868424
IQCF3_chr3_51824426_51835856	1/1	c0001	465	332	86	66	129	16	33	copy fasta	IQCF3	chr3	51824426	51835856
IQCF3_chr3_51824426_51835856	0/0	c0002	465	3	0	0	0	0	3	copy fasta	IQCF3	chr3	51824426	51835856
IQCF3_chr3_51824426_51835856	0/0	c0003	465	2	2	0	0	0	0	copy fasta	IQCF3	chr3	51824426	51835856
IQCF3_chr3_51824426_51835856	0/0	c0004	465	1	1	0	0	0	0	copy fasta	IQCF3	chr3	51824426	51835856
IQCF3_chr3_51824426_51835856	0/0	c0005	465	1	0	0	1	0	0	copy fasta	IQCF3	chr3	51824426	51835856
IQCF3_chr3_51824426_51835856	0/0	c0006	465	1	1	0	0	0	0	copy fasta	IQCF3	chr3	51824426	51835856
IQCF5_chr3_51868721_51880601	1/1	c0001	447	371	94	64	157	18	36	copy fasta	IQCF5	chr3	51868721	51880601
IQCF5_chr3_51868721_51880601	0/0	c0002	447	3	0	0	3	0	0	copy fasta	IQCF5	chr3	51868721	51880601
IQCF5_chr3_51868721_51880601	0/0	c0003	447	1	0	0	1	0	0	copy fasta	IQCF5	chr3	51868721	51880601
IQCF5_chr3_51868721_51880601	0/0	c0004	447	1	1	0	0	0	0	copy fasta	IQCF5	chr3	51868721	51880601
IQCF5_chr3_51868721_51880601	0/0	c0005	447	1	0	0	1	0	0	copy fasta	IQCF5	chr3	51868721	51880601
IQCF5_chr3_51868721_51880601	0/0	c0006	447	1	1	0	0	0	0	copy fasta	IQCF5	chr3	51868721	51880601
IQCF6_chr3_51773563_51784237	1/1	c0001	441	346	78	54	168	9	35	copy fasta	IQCF6	chr3	51773563	51784237
IQCF6_chr3_51773563_51784237	0/0	c0002	441	41	1	14	14	5	7	copy fasta	IQCF6	chr3	51773563	51784237
IQCF6_chr3_51773563_51784237	0/0	c0003	441	19	10	2	7	0	0	copy fasta	IQCF6	chr3	51773563	51784237
IQCF6_chr3_51773563_51784237	0/0	c0004	441	7	0	0	7	0	0	copy fasta	IQCF6	chr3	51773563	51784237
IQCF6_chr3_51773563_51784237	0/0	c0005	441	2	2	0	0	0	0	copy fasta	IQCF6	chr3	51773563	51784237
IQCF6_chr3_51773563_51784237	0/0	c0006	441	2	0	0	0	2	0	copy fasta	IQCF6	chr3	51773563	51784237