JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IQCF6_chr3_51773563_51784237	0/0	c0007	441	1	1	0	0	0	0	copy fasta	IQCF6	chr3	51773563	51784237
IQCG_chr3_197884077_197964991	1/1	c0001	1332	127	19	34	49	7	16	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	c0002	1332	95	37	17	25	3	13	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	c0003	1332	22	8	0	9	0	5	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	c0004	1332	18	15	3	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	c0005	1332	12	0	6	6	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	c0006	1332	1	0	1	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	c0007	1332	1	0	0	1	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	c0008	1332	1	1	0	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	c0009	1332	1	1	0	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	c0010	1332	1	1	0	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	c0011	1332	1	0	1	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCH_chr15_67249786_67506804	0/1	c0001	3084	265	77	33	127	9	18	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	c0002	3084	2	0	0	0	0	2	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	c0003	3084	2	0	1	0	1	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	c0004	3084	2	2	0	0	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	c0005	3084	1	1	0	0	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	1/0	c0006	3084	1	0	0	0	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	c0007	3084	1	0	1	0	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	c0008	3007	1	0	1	0	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	c0009	3082	1	0	0	1	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCJ_chr3_159064319_159268747	1/1	c0001	339	245	71	44	94	10	24	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	c0002	339	5	5	0	0	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	c0003	339	1	1	0	0	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	c0004	339	1	1	0	0	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCK_chr16_19713271_19863467	1/1	c0001	864	184	82	36	39	8	17	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	c0002	864	58	6	6	33	2	11	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	c0003	864	1	1	0	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	c0004	864	1	1	0	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCM_chr4_149346709_149820843	1/1	c0001	1506	157	47	17	67	4	20	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	c0002	1506	59	1	6	38	2	12	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	c0003	1506	10	10	0	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	c0004	1506	6	6	0	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	c0005	1504	6	4	1	0	0	1	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	c0006	1506	3	3	0	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	c0007	1506	2	0	0	2	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	c0008	1506	2	2	0	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	c0009	1506	2	0	0	2	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	c0010	1506	1	1	0	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	c0011	1506	1	0	0	0	0	1	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	c0012	1506	1	0	0	1	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	c0013	1506	1	0	1	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	c0014	1506	1	0	1	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCN_chr19_18252098_18279452	1/1	c0001	4104	142	16	25	71	6	22	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0002	4104	88	0	24	55	5	4	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0003	4104	59	0	8	39	1	11	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0004	4104	26	14	8	2	1	1	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0005	4104	11	10	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0006	4104	10	0	0	10	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0007	4104	7	7	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452