JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IQCN_chr19_18252098_18279452	0/0	c0008	4104	6	5	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0009	4104	6	6	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0010	4104	5	0	0	5	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0011	4104	4	3	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0012	4104	4	0	2	0	1	1	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0013	4104	4	0	4	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0014	4104	3	0	0	3	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0015	4104	3	3	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0016	4104	3	3	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0017	4104	3	0	0	3	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0018	4104	3	3	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0019	4104	3	0	0	0	0	3	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0020	4104	2	0	0	0	2	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0021	4104	2	2	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0022	4104	2	0	0	2	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0023	4104	2	0	0	0	0	2	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0024	4104	2	2	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0025	4094	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0026	4104	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0027	4104	1	0	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0028	4104	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0029	4104	1	0	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0030	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0031	4104	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0032	4104	1	0	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0033	4104	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0034	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0035	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0036	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0037	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0038	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0039	4104	1	0	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0040	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0041	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0042	4104	1	0	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0043	4104	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0044	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0045	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0046	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0047	4104	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0048	4104	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0049	4104	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0050	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0051	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0052	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0053	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0054	4104	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0055	4104	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0056	4104	1	0	0	0	0	1	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	c0057	4104	1	0	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452