JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IQCN_chr19_18252098_18279452	0/0	c0058	4104	1	0	0	0	0	1	copy fasta	IQCN	chr19	18252098	18279452
IQGAP1_chr15_90383242_90507239	1/1	c0001	4974	168	19	29	86	7	25	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0002	4974	135	53	20	51	4	7	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0003	4974	30	2	0	25	1	2	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0004	4974	4	4	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0005	4974	2	2	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0006	4974	2	2	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0007	4974	2	0	0	0	2	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0008	4974	2	0	0	2	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0009	4974	2	1	1	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0010	4974	1	0	1	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0011	4974	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0012	4974	1	1	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0013	4974	1	1	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0014	4974	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0015	4974	1	1	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0016	4974	1	1	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0017	4974	1	0	1	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0018	4974	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0019	4974	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0020	4974	1	1	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0021	4974	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	c0022	4974	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP2_chr5_76398285_76713132	0/0	c0001	4728	46	14	4	19	0	9	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0002	4728	35	10	4	13	0	8	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0003	4728	17	3	9	1	1	3	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0004	4728	16	6	2	6	0	2	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0005	4728	10	0	1	6	1	2	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0006	4728	7	3	2	0	1	1	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0007	4728	6	1	5	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0008	4728	6	4	2	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0009	4728	5	4	1	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0010	4728	4	0	1	3	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0011	4728	4	0	0	4	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0012	4728	3	0	0	3	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0013	4728	3	3	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0014	4728	3	3	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0015	4728	3	0	0	3	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0016	4728	3	0	2	0	1	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0017	4728	3	0	0	3	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0018	4728	2	2	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0019	4728	2	1	0	0	0	1	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0020	4728	2	2	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0021	4728	2	0	1	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/1	c0022	4728	2	0	1	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0023	4728	2	0	2	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0024	4728	2	0	0	2	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0025	4728	2	0	0	2	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0026	4728	2	0	0	2	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0027	4728	2	1	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132