JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IQGAP2_chr5_76398285_76713132	0/0	c0028	4728	1	0	0	0	0	1	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0029	4728	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0030	4728	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0031	4728	1	0	0	0	0	1	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0032	4728	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0033	4728	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0034	4728	1	0	1	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0035	4728	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0036	4728	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0037	4728	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0038	4728	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0039	4728	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0040	4728	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0041	4728	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0042	4728	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0043	4728	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0044	4728	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0045	4728	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0046	4728	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0047	4728	1	0	1	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0048	4728	1	0	1	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	1/0	c0049	4728	1	0	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0050	4728	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0051	4728	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0052	4728	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0053	4728	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0054	4728	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	c0055	4728	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP3_chr1_156520405_156577565	0/0	c0001	4896	112	14	23	61	4	10	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/1	c0002	4896	97	7	22	57	4	6	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0003	4896	28	19	3	1	2	3	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0004	4896	12	4	2	3	0	3	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0005	4896	11	11	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0006	4896	9	9	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0007	4896	8	4	1	0	0	3	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0008	4896	7	0	1	6	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0009	4896	7	1	4	0	0	2	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0010	4896	5	5	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0011	4896	5	5	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0012	4896	5	5	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	1/0	c0013	4896	4	3	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0014	4896	3	0	0	3	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0015	4896	3	0	1	0	2	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0016	4896	2	0	0	2	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0017	4896	2	2	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0018	4896	2	1	0	1	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0019	4896	2	0	0	1	0	1	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0020	4896	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0021	4896	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0022	4896	1	0	0	1	0	0	copy fasta	IQGAP3	chr1	156520405	156577565