JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IQGAP3_chr1_156520405_156577565	0/0	c0023	4896	1	0	1	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0024	4896	1	0	1	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0025	4896	1	0	0	0	0	1	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0026	4896	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0027	4896	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0028	4896	1	0	1	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0029	4896	1	0	0	1	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0030	4896	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0031	4896	1	0	0	1	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0032	4896	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0033	4896	1	0	0	1	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0034	4896	1	0	0	0	0	1	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	c0035	4896	1	0	0	1	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQSEC1_chr3_12892043_13078429	1/1	c0001	3345	177	55	28	52	10	30	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0002	3346	13	3	3	6	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0003	3345	13	0	2	10	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0004	3342	12	11	1	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0005	3345	3	3	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0006	3345	3	0	3	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0007	3345	3	3	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0008	3345	2	0	0	0	0	2	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0009	3345	2	0	2	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0010	3345	2	2	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0011	3345	1	0	1	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0012	3342	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0013	3345	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0014	3345	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0015	3346	1	0	1	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0016	3345	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0017	3345	1	0	1	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0018	3345	1	0	0	0	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0019	3346	1	0	0	0	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0020	3345	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0021	3345	1	0	1	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0022	3345	1	0	1	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0023	3346	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0024	3342	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0025	3345	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0026	3345	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0027	3345	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0028	3345	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0029	3346	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	c0030	3345	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC2_chrX_53227876_53326350	1/1	c0001	4467	177	44	26	85	5	15	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	c0002	4467	14	12	2	0	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	c0003	4467	7	7	0	0	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	c0004	4467	4	4	0	0	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	c0005	4467	2	0	2	0	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	c0006	4468	2	0	0	2	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	c0007	4467	1	1	0	0	0	0	copy fasta	IQSEC2	chrX	53227876	53326350