JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IQSEC2_chrX_53227876_53326350	0/0	c0008	4467	1	0	0	1	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	c0009	4467	1	1	0	0	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	c0010	4467	1	1	0	0	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	c0011	4467	1	0	0	0	0	1	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	c0012	4467	1	0	0	1	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	c0013	4467	1	0	0	1	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53261328_53286584	1/1	c0001	222	298	78	46	133	7	32	copy fasta	IQSEC2	chrX	53261328	53286584
IQSEC2_chrX_53261328_53286584	0/0	c0002	222	1	0	1	0	0	0	copy fasta	IQSEC2	chrX	53261328	53286584
IQSEC3_chr12_61767_183455	0/0	c0001	3549	58	25	6	15	3	9	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0002	3549	35	3	6	18	2	6	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0003	3549	31	7	9	13	1	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0004	3549	21	6	2	7	2	4	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0005	3549	15	11	3	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/1	c0006	3549	14	0	2	8	2	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0007	3549	12	1	0	11	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0008	3549	7	1	1	5	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0009	3549	7	0	5	1	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0010	3549	7	5	2	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0011	3549	6	2	0	3	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0012	3549	5	5	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0013	3549	4	4	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0014	3552	3	0	0	3	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0015	3549	3	3	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0016	3569	3	3	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0017	3549	3	2	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0018	3549	2	2	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0019	3549	2	0	2	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0020	3549	2	0	2	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0021	3549	2	0	1	0	1	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0022	3549	2	0	1	0	1	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0023	3549	2	0	1	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0024	3549	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0025	3549	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0026	3549	1	0	0	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0027	3549	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0028	3549	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0029	3549	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	1/0	c0030	3549	1	0	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0031	3549	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0032	3549	1	0	0	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0033	3549	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0034	3549	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0035	3569	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0036	3549	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0037	3549	1	0	0	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0038	3569	1	0	0	0	1	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0039	3569	1	0	0	0	1	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0040	3549	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0041	3549	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0042	3549	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455