JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IQSEC3_chr12_61767_183455	0/0	c0043	3549	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0044	3549	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0045	3549	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0046	3549	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0047	3546	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0048	3549	1	0	0	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0049	3549	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0050	3549	1	0	0	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0051	3549	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0052	3549	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0053	3549	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0054	3549	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0055	3549	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0056	3549	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0057	3569	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0058	3549	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	c0059	3549	1	0	0	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQUB_chr7_123447193_123539595	1/1	c0001	2376	220	49	34	93	10	32	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0002	2376	95	8	15	60	4	8	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0003	2376	10	9	1	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0004	2376	9	8	1	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0005	2376	6	6	0	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0006	2376	4	1	1	0	0	2	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0007	2376	4	4	0	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0008	2376	4	4	0	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0009	2376	3	0	0	3	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0010	2376	3	3	0	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0011	2376	2	2	0	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0012	2376	2	0	0	2	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0013	2376	2	0	0	0	1	1	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0014	2376	1	0	0	1	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0015	2376	1	0	0	0	0	1	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0016	2376	1	0	1	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0017	2376	1	0	0	1	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0018	2376	1	0	1	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	c0019	2376	1	0	0	0	1	0	copy fasta	IQUB	chr7	123447193	123539595
IRAG1_chr11_10568095_10698755	0/0	c0001	2739	60	12	20	14	5	9	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/1	c0002	2739	58	7	17	24	3	6	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0003	2739	48	15	9	18	4	2	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0004	2739	17	2	8	0	3	4	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0005	2739	14	9	2	1	1	1	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0006	2739	10	2	2	2	0	4	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0007	2739	7	7	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0008	2739	7	3	1	0	0	3	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0009	2739	5	0	2	2	0	1	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0010	2739	4	4	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0011	2739	3	2	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0012	2739	3	3	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0013	2739	2	1	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0014	2739	2	1	1	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755