JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IRAG1_chr11_10568095_10698755	0/0	c0015	2739	2	2	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0016	2739	2	0	0	2	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0017	2739	2	2	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0018	2739	2	0	0	2	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0019	2739	2	1	1	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0020	2739	2	2	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0021	2739	2	2	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0022	2739	1	0	1	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0023	2739	1	0	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0024	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0025	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0026	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0027	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0028	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	1/0	c0029	2739	1	0	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0030	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0031	2739	1	0	0	0	0	1	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0032	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0033	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0034	2739	1	0	0	0	0	1	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0035	2739	1	0	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0036	2739	1	0	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0037	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0038	2739	1	0	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0039	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0040	2739	1	0	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0041	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0042	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0043	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0044	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	c0045	2739	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG2_chr12_25047706_25113335	0/1	c0001	1500	138	9	33	71	7	17	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	c0002	1500	100	41	31	19	0	9	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	1/0	c0003	1500	55	18	13	14	5	4	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	c0004	1500	24	4	9	0	2	9	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	c0005	1500	8	8	0	0	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	c0006	1500	8	8	0	0	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	c0007	1500	3	0	0	3	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	c0008	1500	2	0	0	2	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	c0009	1500	2	2	0	0	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	c0010	1500	2	0	0	2	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	c0011	1500	1	0	0	1	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	c0012	1500	1	0	0	0	0	1	copy fasta	IRAG2	chr12	25047706	25113335
IRAK1BP1_chr6_78862551_78908102	1/1	c0001	783	245	74	38	96	5	30	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	c0002	783	95	19	18	42	6	10	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	c0003	783	3	0	0	3	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	c0004	783	1	0	0	1	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	c0005	783	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	c0006	783	1	0	0	0	1	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1_chrX_154005507_154024902	0/0	c0001	2139	120	8	18	81	0	13	copy fasta	IRAK1	chrX	154005507	154024902