JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IRAK1_chrX_154005507_154024902	0/0	c0002	2139	88	10	22	35	9	12	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0003	2139	29	23	5	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0004	2139	20	19	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0005	2139	5	4	1	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0006	2139	4	4	0	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0007	2139	3	3	0	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0008	2139	2	0	2	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0009	2139	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0010	2139	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0011	2139	1	0	0	0	0	1	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0012	2140	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0013	2139	1	1	0	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0014	2139	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0015	2139	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0016	2139	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	c0017	2141	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK2_chr3_10159919_10248745	0/0	c0001	1878	117	48	16	39	1	13	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/1	c0002	1878	66	12	23	15	4	11	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0003	1878	27	0	3	20	2	2	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	1/0	c0004	1878	25	5	10	1	3	5	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0005	1878	12	11	1	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0006	1878	8	8	0	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0007	1878	7	0	0	7	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0008	1878	5	0	3	0	0	2	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0009	1878	5	0	2	0	2	1	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0010	1878	3	3	0	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0011	1878	3	0	0	1	0	2	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0012	1878	3	0	1	1	0	1	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0013	1878	2	0	0	1	0	1	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0014	1878	1	0	0	1	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0015	1878	1	1	0	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0016	1878	1	0	0	1	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0017	1878	1	1	0	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0018	1878	1	1	0	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0019	1878	1	0	1	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0020	1878	1	0	0	1	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0021	1878	1	0	1	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	c0022	1878	1	0	1	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK3_chr12_66184214_66259622	0/1	c0001	1791	230	37	50	98	16	28	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	1/0	c0002	1791	101	37	3	54	0	6	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	c0003	1791	9	7	2	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	c0004	1791	2	0	0	2	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	c0005	1791	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	c0006	1791	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	c0007	1791	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	c0008	1791	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK4_chr12_43753951_43794541	1/0	c0001	1383	275	54	52	129	11	28	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/1	c0002	1383	72	30	17	17	1	6	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	c0003	1383	2	0	2	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	c0004	1383	1	0	0	1	0	0	copy fasta	IRAK4	chr12	43753951	43794541