JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALLC_chr2_3653200_3707671	0/0	c0013	1173	1	1	0	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	c0014	1173	1	1	0	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	c0015	1173	1	0	0	1	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	c0016	1173	1	0	0	1	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALMS1_chr2_73380836_73614916	0/0	c0001	12510	46	0	14	21	3	8	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0002	12498	25	0	0	22	0	3	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0003	12498	22	2	14	0	1	5	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0004	12498	14	13	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0005	12504	12	2	7	3	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0006	12513	11	2	4	4	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0007	12501	7	6	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0008	12501	6	5	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0009	12504	6	3	2	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0010	12501	4	4	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0011	12498	4	0	1	0	3	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0012	12498	4	3	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0013	12498	4	4	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0014	12507	4	2	0	1	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/1	c0015	12510	3	0	0	0	1	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0016	12510	3	0	0	3	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0017	12492	2	2	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0018	12498	2	1	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0019	12498	2	0	1	0	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0020	12498	2	2	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0021	12498	2	2	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0022	12498	2	2	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0023	12498	2	2	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0024	12498	2	2	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0025	12498	2	2	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0026	12498	2	2	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0027	12504	2	0	1	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0028	12501	2	0	0	2	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0029	12501	2	2	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0030	12492	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0031	12492	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0032	12501	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0033	12501	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0034	12501	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0035	12498	1	0	0	0	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0036	12498	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0037	12498	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0038	12498	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0039	12498	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0040	12498	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0041	12498	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0042	12498	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0043	12498	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0044	12498	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0045	12498	1	0	0	0	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0046	12498	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916