JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IRAK4_chr12_43753951_43794541	0/0	c0005	1383	1	1	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	c0006	1383	1	1	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	c0007	1383	1	0	0	1	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	c0008	1383	1	0	1	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IREB2_chr15_78433216_78506453	0/0	c0001	2892	240	52	33	124	6	25	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/1	c0002	2892	151	22	31	72	8	17	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	c0003	2892	7	6	1	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	c0004	2892	6	0	0	6	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	c0005	2892	4	4	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	c0006	2892	4	4	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	c0007	2892	2	0	2	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	c0008	2892	2	0	0	2	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	c0009	2892	1	1	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	c0010	2892	1	1	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	1/0	c0011	2892	1	0	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	c0012	2892	1	0	1	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IRF1_chr5_132476609_132495773	1/0	c0001	978	259	53	35	139	7	24	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/1	c0002	978	175	37	41	71	7	18	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	c0003	978	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	c0004	978	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF2BP1_chr19_45878608_45891141	1/0	c0001	1755	237	37	48	102	14	35	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0002	1755	61	5	10	45	0	1	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0003	1755	42	27	11	0	2	2	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/1	c0004	1755	24	20	1	0	0	2	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0005	1755	17	1	1	15	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0006	1755	11	0	0	11	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0007	1756	7	0	3	3	0	1	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0008	1756	5	0	0	5	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0009	1755	2	2	0	0	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0010	1755	2	0	0	0	0	2	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0011	1755	1	0	0	1	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0012	1755	1	0	1	0	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0013	1756	1	0	1	0	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0014	1755	1	1	0	0	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0015	1755	1	0	0	0	0	1	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0016	1756	1	0	0	1	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0017	1755	1	1	0	0	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	c0018	1755	1	0	0	1	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP2_chr1_234599269_234615178	1/0	c0001	1764	183	17	35	111	1	18	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0002	1764	81	1	14	59	2	5	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/1	c0003	1764	38	15	9	2	4	7	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0004	1764	32	28	4	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0005	1764	24	13	5	2	3	1	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0006	1764	19	4	1	6	4	4	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0007	1767	13	13	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0008	1767	8	0	3	1	0	4	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0009	1764	8	0	4	0	2	2	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0010	1764	3	0	1	0	2	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0011	1764	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0012	1764	1	0	1	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178