JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IRF2BP2_chr1_234599269_234615178	0/0	c0013	1764	1	0	0	0	0	1	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0014	1764	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0015	1764	1	0	1	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0016	1764	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0017	1764	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0018	1764	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0019	1764	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0020	1764	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	c0021	1764	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BPL_chr14_77019543_77033708	0/1	c0001	2388	146	10	27	77	10	21	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0002	2385	91	32	19	29	2	9	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0003	2385	54	8	24	17	1	4	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	1/0	c0004	2391	45	6	3	31	0	4	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0005	2382	15	9	1	4	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0006	2388	8	6	0	0	0	2	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0007	2379	7	7	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0008	2385	7	0	0	7	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0009	2385	3	3	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0010	2376	3	3	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0011	2397	3	0	3	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0012	2385	3	0	0	0	3	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0013	2379	2	0	0	2	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0014	2388	2	2	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0015	2388	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0016	2391	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0017	2385	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0018	2385	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0019	2385	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0020	2385	1	0	1	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0021	2391	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0022	2391	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0023	2391	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0024	2388	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0025	2391	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0026	2388	1	0	0	0	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0027	2373	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0028	2388	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0029	2388	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0030	2388	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0031	2388	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0032	2391	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0033	2412	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0034	2388	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0035	2391	1	0	0	0	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0036	2376	1	0	0	0	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0037	2388	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0038	2388	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	c0039	2385	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2_chr4_184382729_184479550	1/1	c0001	1050	219	49	38	104	7	19	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	c0002	1050	137	29	35	47	7	19	copy fasta	IRF2	chr4	184382729	184479550