JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IRF2_chr4_184382729_184479550	0/0	c0003	1050	7	5	2	0	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	c0004	1050	6	6	0	0	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	c0005	1050	1	1	0	0	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	c0006	1050	1	0	0	1	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	c0007	1050	1	0	1	0	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	c0008	1050	1	0	0	1	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	c0009	1050	1	0	0	1	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	c0010	1050	1	0	0	1	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	c0011	1050	1	0	0	1	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF3_chr19_49654572_49670857	0/1	c0001	1284	186	55	35	68	5	22	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	1/0	c0002	1284	178	23	39	84	7	24	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0003	1284	10	9	1	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0004	1284	6	0	0	6	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0005	1284	4	4	0	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0006	1284	3	0	3	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0007	1284	2	2	0	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0008	1284	2	0	0	2	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0009	1284	1	0	1	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0010	1284	1	0	0	1	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0011	1284	1	1	0	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0012	1284	1	0	0	1	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0013	1284	1	1	0	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0014	1284	1	1	0	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0015	1284	1	0	0	1	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0016	1284	1	0	1	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	c0017	1284	1	0	0	1	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF4_chr6_386752_416443	1/1	c0001	1356	421	81	77	203	16	42	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	c0002	1356	21	1	0	20	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	c0003	1356	12	10	2	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	c0004	1356	4	0	0	4	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	c0005	1356	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	c0006	1356	1	0	1	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF5_chr7_128932927_128955038	0/1	c0001	1515	199	55	29	89	6	19	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	1/0	c0002	1545	193	35	40	84	10	23	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	c0003	1515	2	2	0	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	c0004	1515	2	0	2	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	c0005	1515	1	0	0	1	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	c0006	1545	1	0	1	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	c0007	1515	1	0	1	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	c0008	1515	1	0	0	1	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	c0009	1545	1	1	0	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	c0010	1545	1	0	1	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	c0011	1545	1	1	0	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	c0012	1515	1	0	0	1	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF6_chr1_209780617_209811142	1/1	c0001	1404	226	69	31	89	10	25	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	c0002	1404	91	9	24	32	8	18	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	c0003	1404	84	0	15	66	0	3	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	c0004	1404	11	0	0	11	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	c0005	1404	7	7	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	c0006	1404	5	5	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142