JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IRF6_chr1_209780617_209811142	0/0	c0007	1404	1	1	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	c0008	1404	1	0	0	1	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	c0009	1404	1	0	0	1	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	c0010	1404	1	1	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF7_chr11_607555_620950	0/0	c0001	1512	212	26	31	109	9	37	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/1	c0002	1512	87	47	25	6	5	3	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	c0003	1512	81	13	13	45	2	8	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	c0004	1512	13	8	5	0	0	0	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	c0005	1512	7	0	0	7	0	0	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	c0006	1512	3	2	1	0	0	0	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	c0007	1512	2	1	1	0	0	0	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	c0008	1512	1	1	0	0	0	0	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	c0009	1512	1	0	0	1	0	0	copy fasta	IRF7	chr11	607555	620950
IRF8_chr16_85894162_85927606	1/1	c0001	1281	331	67	39	184	10	29	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	c0002	1281	29	12	7	0	4	6	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	c0003	1281	21	1	6	12	0	2	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	c0004	1281	10	0	2	8	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	c0005	1281	9	0	7	2	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	c0006	1281	6	4	2	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	c0007	1281	6	3	1	0	2	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	c0008	1281	5	5	0	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	c0009	1281	5	3	2	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	c0010	1281	4	0	0	4	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	c0011	1281	3	3	0	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	c0012	1281	1	0	0	1	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	c0013	1281	1	0	0	0	0	1	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	c0014	1281	1	0	0	1	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF9_chr14_24156265_24171565	1/1	c0001	1182	420	83	68	203	18	46	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	c0002	1182	7	7	0	0	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	c0003	1182	3	3	0	0	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	c0004	1182	2	2	0	0	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	c0005	1182	2	2	0	0	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	c0006	1182	1	1	0	0	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	c0007	1182	1	0	1	0	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	c0008	1165	1	0	0	1	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	c0009	1182	1	0	1	0	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRGC_chr19_43711076_43725021	1/1	c0001	1392	301	33	60	151	16	39	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0002	1392	43	41	2	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0003	1392	34	3	3	26	0	2	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0004	1392	13	5	3	0	2	3	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0005	1392	3	3	0	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0006	1392	3	3	0	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0007	1392	2	2	0	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0008	1392	2	2	0	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0009	1392	2	0	0	2	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0010	1392	2	2	0	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0011	1392	1	1	0	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0012	1392	1	0	0	1	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0013	1392	1	0	1	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0014	1392	1	1	0	0	0	0	copy fasta	IRGC	chr19	43711076	43725021