JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IRGC_chr19_43711076_43725021	0/0	c0015	1392	1	0	1	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0016	1392	1	1	0	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	c0017	1392	1	1	0	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGM_chr5_150841521_150853702	1/1	c0001	546	205	39	54	72	10	28	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	c0002	546	132	48	17	56	2	9	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	c0003	546	52	1	7	41	0	3	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	c0004	546	1	0	0	1	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGQ_chr19_43579367_43601134	1/0	c0001	1872	209	46	31	96	14	21	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/1	c0002	1872	191	39	44	77	4	26	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	c0003	1872	13	4	0	9	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	c0004	1872	3	0	0	3	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	c0005	1872	3	3	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	c0006	1872	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	c0007	1872	1	0	0	0	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	c0008	1773	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	c0009	1872	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	c0010	1872	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	c0011	1872	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	c0012	1872	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRS1_chr2_226726312_226804820	1/0	c0001	3729	121	30	27	45	5	13	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/1	c0002	3729	78	15	16	42	1	3	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0003	3729	35	16	3	8	0	8	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0004	3729	10	4	0	4	1	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0005	3729	10	10	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0006	3729	5	0	0	5	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0007	3732	3	0	0	3	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0008	3729	2	0	0	2	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0009	3729	2	0	0	2	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0010	3729	2	0	0	2	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0011	3729	2	2	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0012	3729	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0013	3729	1	0	0	0	1	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0014	3729	1	0	0	0	0	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0015	3729	1	0	1	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0016	3729	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0017	3729	1	0	1	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0018	3729	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	c0019	3729	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS2_chr13_109747695_109791583	1/1	c0001	4017	114	22	14	67	2	7	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0002	4017	95	9	18	51	5	12	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0003	4017	59	12	9	25	3	10	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0004	4017	57	26	10	12	3	6	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0005	4017	13	1	4	7	0	1	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0006	4018	11	0	2	7	0	2	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0007	4017	7	7	0	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0008	4018	7	1	0	3	0	3	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0009	4017	6	6	0	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0010	4018	5	0	0	4	0	1	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0011	4017	3	0	3	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0012	4018	3	1	2	0	0	0	copy fasta	IRS2	chr13	109747695	109791583